| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0148 |
|---|
| Symbol | |
|---|
| ID | 8417952 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 192805 |
|---|
| End bp | 193695 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 645036713 |
|---|
| Product | signal peptide peptidase SppA, 36K type |
|---|
| Protein accession | YP_003197028 |
|---|
| Protein GI | 258404286 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
|---|
| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0000244919 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.445804 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATAAGA CGCCCAACTT CAGCCAACGC CATCCGTTTC TCTTCGGATT CATGCTGATT
GCAGCGGCCG TGGCCCTCTT TATGGGGGCC ATGGCCGCTT TCTCGTATTG GTCCGGGCAG
GGCGGGGGAT GGGGCCAGCC CCAAATAGGG GTGGTCCATG TCCGCGGCGT ATTGACCAAC
GCCCGGCCGG TCACGCATTG GATCGAGACC CTGCGGCAGA AAAACCGGGT CAAGGGCGTT
TTGGTGCGCA TCAATTCGCC TGGCGGTGTG GTTGCCCCCT CCCAGGAGGT CTATTCCGCG
GTCAGTTCTC TGGCCGAAGA CAAGCCGGTG GTGGTGTCCA TGGGCTCTGT GGCCGCTTCT
GGAGGGTATT ATGTTGCAGT GGGGGCGCCG ACAATTTTCG CTAACCCCGG GACCATTACG
GGCAGTATCG GCGTCAAGGC GCAACTGAAG AATTTCAAGG GCCTTTTGGA TAAACTCGGC
ATTGAGGACG AAACCGTGGT CAGCGGTCCG CTCAAGGACG CCACCTCGGC AGCGAAGCCG
ATGACTGAGG CCGAGCGGAA ATACATGCAG GGCATGGTGG ATGATATGCA TGCCCAATTT
GTCCAGGCGA TAGCCAAAGG CCGGGATATG GATCTGGAAG TGGTTCGCCG GTTGGCTGAC
GGCCGGGCCT ACACCGGCCG CCAAGCTAAG GACCTTGGTC TGGTCGATGC CCTGGGCTCA
ATGCAGGACG CATTGGACGT GCTGCGGCAC AAAGCTCAGG TAGGAACCGA CTATGCGCTG
GTCGAAGGGC CGGAACGGGA ACGGTCCTTG TGGCAATGGC TGTTGAGCAC GGTCAGTATA
CAGTGGCCCG ATATGACCGG GGAACCCCAT TGGGAATTTC GTTATGAGTG A
|
|---|
| Protein sequence | MNKTPNFSQR HPFLFGFMLI AAAVALFMGA MAAFSYWSGQ GGGWGQPQIG VVHVRGVLTN
ARPVTHWIET LRQKNRVKGV LVRINSPGGV VAPSQEVYSA VSSLAEDKPV VVSMGSVAAS
GGYYVAVGAP TIFANPGTIT GSIGVKAQLK NFKGLLDKLG IEDETVVSGP LKDATSAAKP
MTEAERKYMQ GMVDDMHAQF VQAIAKGRDM DLEVVRRLAD GRAYTGRQAK DLGLVDALGS
MQDALDVLRH KAQVGTDYAL VEGPERERSL WQWLLSTVSI QWPDMTGEPH WEFRYE
|
|---|
| |