Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_0145 |
Symbol | |
ID | 8417949 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 186886 |
End bp | 189273 |
Gene Length | 2388 bp |
Protein Length | 795 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 645036710 |
Product | MscS Mechanosensitive ion channel |
Protein accession | YP_003197025 |
Protein GI | 258404283 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3264] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.584574 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCCAAT CCCCTTTTTC TGAAAAACTC CCTTCTGTCG CAACGCTTCT TAGTCTCGTT TTTTTGACTC TGCTTCTGCC TCTTCCTGGG AGGGCCCAGC CTGAGGAGCC GGACACCGAG ACCCAGCGCT GGGAAGCGCT TTTGGCCAAC AAACAGGAAG AAGTCTCCGA CCTTGGCGAA CAGCTCGACC AGATCCAATC CACCTATGAG GCCAACACGG CCGAGGCCCA AAAACAGATC GAGGCCCTGA CCGACGAACT CAACCGCTTG ACCGCCCTGA AAGGGCTCTC AGCACACAAC CCCCGGGAGA CCCTTGGGCT ACGCAACACG ATCCAGTCTC TGACAACGCA GCTCAATTCG GACACCATGC CCCTCAGGGA AGCGCAGAGT CGGCTTGAGA CCATTGCCCA CGAACTCGAT GTGCGCCAAA AGGAGTTGCA GGAAACCACA CCGCCCACGC CCCAGGGCCA AAAAACGTTG GTCAATTACC AAAAAGACCT GAAAAACCTC CAACGCCGGG CCAATACCCT GGAAACCCGG ATCCAAAAGA GCCTCGCCCC AGCTCTAGAA CTGGAGAAGG AACTCAACGC GACTGTGACC GCCCTGGACA AAACCTTGAG TTCGGTCTGG CGGCAGTATT TCTTTGAACC CTCTCCAACG TTGCTGGCCT TTCAGGATCC CGGGAGCATG CAACCCCTGA CCCGCTGGAT GAAATACCTG CCCACCTATA CCCGTGTGGT CCTTTTGGGG GATATCGACT GGTTTGCACT GGGCTCCGTG GTGCTGGTCT TTTTCGCCTT GTCCATGCTC CCGATTCATC TCTGGATTTT GCCGGCGCTG GAAAAGAGTT CGCTGCAGCT GACAATGCGC GAGATGGCGC CCCCCTTGTA TTGGGTAGCA TTGGGCCTGG CCCTGATGGT CTCCACAACG ATCCTCCCCA GTGGTCAGGG CTGCCTGGTC CGCAGCTTCA CCCAGCTTTT TTTGAGTTGG GGCATCATGC TCGCCCTTTG GCCGTTGCGG CAGTATCAGC TCGGCGAGAA CGCCCCGCGG CGCAACCACA TCCGCCTTTT GTGGACGCTG TATGCCATCG CCGTCATCCT CCAGGATATC AATCTGCCGC CCCTGTTTTT GGGTCCGCTC TGGGCCGGAG TGCTGGTCAT GGGGGCTATC TGGAGCAAGA AGCGGTGCAC GCCGGACAAA CCGAAACTGG AACGGTCCAT TTTTGGGGCC AGTATCCCGT TTTTCATCCT CCTCATTATC GGGTCACTCA CCGGATATGT CCATTTCACG CTCTTTCTCA CCGCTGCGTG GTTTGTTTTC TGGCTCGCGG TCCAAATCGG TACCGGGATG GCGGCCTTAT TGCGGTCCTG GAGTGCCCAG ACCTCACCGG CGCTGCTGGA AAACCTGCTC AAAGGCGTAG CGCAAGGAGT GGGATATCCC CTGGTCTGGC TGGGGGCGCT GTCCCTGTTG ATCGGCTGGC TCGGCTACAG TCTTGGCGGC TATCCCTTCC TGAACGAACT GCTGCAGCTC AAGGTGGGCT GGGGCAAGGT CTCCTTCAAT TTCATGCGCA TCCTGGGGGT GGTCATCGGG TTCTATATCG CCCGCTCCGG CCTGATCATC CTGCGGTCCC TGTTCGACAA CGTCATCCGC AAACAGGACC ACTGGGAAAA AGGCACGGCC GAATCCTTGC AGACGATCAT CTCCTATGCG GTTTGGGGGC TTTTTGCCCT GGCGGCCATG TATTTTCTCG GCTTCAATTT CACCAGCCTG GCTGTTATCG CTGGTGGTTT GAGTGTGGGT ATTGGTTTCG GACTCCAGAG CATCATCAAC AATTTTGTCA GCGGCCTGAT TCTGCTTTTC GGACGCTCCA TCCAACCCGG TGACATCGTG GACCTTTCCG GAACGTGGGG TCAGATCAAA CGGGTCAACA TCCGCACAAC TGTGGTCCAG ACCTTTGACA ACTCGACTAT CTTCGTGCCC AATGCCGAAC TCATCGGCGG GCGGATCACG AATTGGACCC ACAAGGACAT CAGCCTGCGC CGGCGGATCG ATGTTGGGGT GGCCTACGGC TCAGACACGG AAAAGGTCAA ACGGCTCTTG CTTGAGCAGG CTCGGAAGCA CCCCCAGGTC TTTCGCTACC CGGAGCCCTT TGTCCGGTTT GCCAACTTCG GCAACTCGAC CCTCGATTTC ATTTTGTATT TCTGGTCCGA CATCAATAAC GGCTGGCATG CGGAATCCGA TCTCCGATTC CAGATCGACC AGGCTTTCCG GGAAAACGGA GTCGAGATCG CCTTTCCGCA ACAGGATCTG CACATCCGGT CCGCCGCGGG TTTGGACCCG TATCTCGCCC GGCCTGCCTC TGCTACCGGG AACACCAGCG AGACATGA
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Protein sequence | MPQSPFSEKL PSVATLLSLV FLTLLLPLPG RAQPEEPDTE TQRWEALLAN KQEEVSDLGE QLDQIQSTYE ANTAEAQKQI EALTDELNRL TALKGLSAHN PRETLGLRNT IQSLTTQLNS DTMPLREAQS RLETIAHELD VRQKELQETT PPTPQGQKTL VNYQKDLKNL QRRANTLETR IQKSLAPALE LEKELNATVT ALDKTLSSVW RQYFFEPSPT LLAFQDPGSM QPLTRWMKYL PTYTRVVLLG DIDWFALGSV VLVFFALSML PIHLWILPAL EKSSLQLTMR EMAPPLYWVA LGLALMVSTT ILPSGQGCLV RSFTQLFLSW GIMLALWPLR QYQLGENAPR RNHIRLLWTL YAIAVILQDI NLPPLFLGPL WAGVLVMGAI WSKKRCTPDK PKLERSIFGA SIPFFILLII GSLTGYVHFT LFLTAAWFVF WLAVQIGTGM AALLRSWSAQ TSPALLENLL KGVAQGVGYP LVWLGALSLL IGWLGYSLGG YPFLNELLQL KVGWGKVSFN FMRILGVVIG FYIARSGLII LRSLFDNVIR KQDHWEKGTA ESLQTIISYA VWGLFALAAM YFLGFNFTSL AVIAGGLSVG IGFGLQSIIN NFVSGLILLF GRSIQPGDIV DLSGTWGQIK RVNIRTTVVQ TFDNSTIFVP NAELIGGRIT NWTHKDISLR RRIDVGVAYG SDTEKVKRLL LEQARKHPQV FRYPEPFVRF ANFGNSTLDF ILYFWSDINN GWHAESDLRF QIDQAFRENG VEIAFPQQDL HIRSAAGLDP YLARPASATG NTSET
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