Gene Dret_0138 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_0138 
Symbol 
ID8417942 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp179501 
End bp180706 
Gene Length1206 bp 
Protein Length401 aa 
Translation table11 
GC content56% 
IMG OID645036703 
Productbeta-lactamase domain protein 
Protein accessionYP_003197018 
Protein GI258404276 
COG category[C] Energy production and conversion 
COG ID[COG0426] Uncharacterized flavoproteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.392817 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGTCA CCGAACTGAA AAAAGATATT TACTGGGTCG GCAGTGTCGA CTGGAATCTG 
CACAATTTTC ACGGGTATTC CCAGGCCCAT CGGGGCACCA CCTACAACGC GTATCTGGTT
ATCGACGAAA AAATCACCCT CTTCGACACC GTTCCCGCGA AATACAGCGG CGAACTCATG
CACCAGATCC GGCGCCTGAT TGACCCCGAA AAAATCGATT ACATCGTGGT CAACCATGTC
GAACCAGACC ACTCCGGCGC TCTGCCGCAT ATTGTGGACA CCATCAAACC TTCGAAAATC
TTTTGCTCTC CCATGGGCAA ACAGGCCATT GGCGAATACT TCCACCGCGA CGACCTGCCC
CTGGAAGTCG TCAAGAACGG GGCCTCCATT TCCTTGGGCA AACGCTCCGT GGAGTTCATG
GAAGCCCGGA TGCTCCACTG GCCCGACTCC ATGTTCTCCT TCATCCCTGA AGACAAGCTG
CTCATTCCCA ACGACGCCTT CGGCCAGAAT TGGGCCGGCA GTGAACGGTT CGACGACGAA
GTCGATCTCT CCATGCTCCT GCGGGAGGCG GCCCATTACT ACGCCAACAT CATCCTCCCC
TTTTCGCCGT TGGTCCAAAA GGTCCTGGGA AAAATCCAGA AGGCCGGATG GGACATCGAC
ATGATCGCCC CGGACCACGG CCTGATCTGG CGCAGTCACG CCAAGGAGAT CATCGAGGCC
TATGACCGCT TCAGCAAACA GGAGCCGCAG CAAAAAGCGG TCATTGTCTA CGATACCATG
TGGCACAGCA CTGAGCAGAT GGCCAAAGCC ATCGGCGACG CCCTTATCGA GGAGGGAGTT
CCCACCCGGC TGATGCACCT CAAGGCCTAC CACCACAGCG ACGTCATGCT CGAGGCCTGG
GACGCTGCGG CCATCATTTA CGGCTCCCCC ACACACAACA ACGGGATCAT GCCCCTGGTC
TCAGACATGG CTACTTATAT GAAAGGTTTG CGCCCTGCCA ACAAGATCGG TGCCGCTTTC
GGCTCCTACG GCTGGAGCGG GGAATCGGTG AAGCATCTGA CCGAACTGTT GGAAGGCATG
GGGTTTGAAC TCCCTGTCGA CGGAGTGCGC TCCAAATTCC GTCCAAACCA CGATGAACTC
GCCCAGTGCA AAGAAATGGG CCGGCAGTTG GCTGCGGCGA TCAAAGAAAA AGTCAACGCT
TCCTGA
 
Protein sequence
MSVTELKKDI YWVGSVDWNL HNFHGYSQAH RGTTYNAYLV IDEKITLFDT VPAKYSGELM 
HQIRRLIDPE KIDYIVVNHV EPDHSGALPH IVDTIKPSKI FCSPMGKQAI GEYFHRDDLP
LEVVKNGASI SLGKRSVEFM EARMLHWPDS MFSFIPEDKL LIPNDAFGQN WAGSERFDDE
VDLSMLLREA AHYYANIILP FSPLVQKVLG KIQKAGWDID MIAPDHGLIW RSHAKEIIEA
YDRFSKQEPQ QKAVIVYDTM WHSTEQMAKA IGDALIEEGV PTRLMHLKAY HHSDVMLEAW
DAAAIIYGSP THNNGIMPLV SDMATYMKGL RPANKIGAAF GSYGWSGESV KHLTELLEGM
GFELPVDGVR SKFRPNHDEL AQCKEMGRQL AAAIKEKVNA S