Gene Dret_0136 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_0136 
Symbol 
ID8417940 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp177350 
End bp178654 
Gene Length1305 bp 
Protein Length434 aa 
Translation table11 
GC content56% 
IMG OID645036701 
Productcytochrome bd ubiquinol oxidase subunit I 
Protein accessionYP_003197016 
Protein GI258404274 
COG category[C] Energy production and conversion 
COG ID[COG1271] Cytochrome bd-type quinol oxidase, subunit 1 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.280065 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCCGT TGCTGCTGTC CCGCCTCCAA TTCGCCATGG CCACGATGTT CCACTTCCTC 
TTCGTTCCAT TGACGTTGGG GTTGTCGATT CTGGTGGCCA TCATGGAGAC CCAGTATGTG
CGCACCCAGG ATGAAAAGTA CAAGCGCATG ACCAAATTTT GGGGCAAGCT GTTCATCATC
AATTTTGTCC TGGGAGTCGT GACCGGGATC ACTCTCGAAT TCCAGTTCGG AACCAATTGG
TCCAGATATT CCGAATATGT TGGGGACATC TTCGGGTCGA TCCTGGCCAT TGAAGCCACG
GCCGCCTTTT TTCTCGAATC GACCTTTCTG GCGGTTTGGA TCTTCGGCTG GAAGCGCGTC
TCCCAAAAAG TCCACCTCCT GTCTATCTGG CTGGTGGCCT TTGCCGGCAA CATGTCCGCA
TTGTGGATCA TCATTGCCAA CGGCTTCATG CAAAATCCCG TCGGCTATGT CATGCGCAAC
GGCCGGGCCG AACTCGCCGA TTTCATGGCC GTGGTCACCC AGCCCTTTGC CTGGCAACAA
TTCATCCACA CCTTGGCTGG CTCGTATATC CTGGCTGGTT TTTTTGTCAT GGGCATCAGC
AGCTACCATT TGCTGCGCAA ACAACACATC GATTTCTTCA CGACCTCCTT TCGCTTCGGG
CTGATCATGG CTCTGCTCTT CTCCATCGTC GAAGTCGGCC AGGGACACTT GCACGGGGCG
GAAGTGGCCA AGATCCAGCC GGCCAAACTC GCCGCCATGG AATCGCATTG GGAAACGCAA
ACCCACGCTC CCCAATACCT GTTTTCCATC CCGGACGAAA AAAACGAACG CAATCTCGTC
AATTTCCTGC CCATCCCCTC GGGCCTCAGT CTGCTGGCCT ACCACCGCGC TGATGCGGAA
GTGAAAGGAC TCAAAGATTT TCCCAAGGAG GATCGCCCTC CGGTCGCCCT GACCTATTGG
TCCTTCCGGG TCATGATCGC CCTGGGTTTT CTCTTCCCGG TGCTCAGCAT CTGGGCTTGG
CTGCGGCGCA AAAAACTGAC CGAGAGCCCC TGGCTCCTCA AAACGCTCAT CTGGGCCATT
CCCCTGCCGT ACATCGCCCT GGAAGCCGGA TGGATGGTAG CTGAAGTGGG GCGGCAACCG
TGGATTGTTC ATGGGCTCAT GCGCACCAGT GACGCCGTCT CCCCGGTGGC CGGTTCCCAG
GTGGGGTTTT CTCTGGTGGC CCTGACCCTG CTCTACGCCG TACTCGGGGC GCTGTGTATC
TATCTCCTGT TTTATTACGC CCGAAAAGGC CCGAGCGAAG CCTAA
 
Protein sequence
MDPLLLSRLQ FAMATMFHFL FVPLTLGLSI LVAIMETQYV RTQDEKYKRM TKFWGKLFII 
NFVLGVVTGI TLEFQFGTNW SRYSEYVGDI FGSILAIEAT AAFFLESTFL AVWIFGWKRV
SQKVHLLSIW LVAFAGNMSA LWIIIANGFM QNPVGYVMRN GRAELADFMA VVTQPFAWQQ
FIHTLAGSYI LAGFFVMGIS SYHLLRKQHI DFFTTSFRFG LIMALLFSIV EVGQGHLHGA
EVAKIQPAKL AAMESHWETQ THAPQYLFSI PDEKNERNLV NFLPIPSGLS LLAYHRADAE
VKGLKDFPKE DRPPVALTYW SFRVMIALGF LFPVLSIWAW LRRKKLTESP WLLKTLIWAI
PLPYIALEAG WMVAEVGRQP WIVHGLMRTS DAVSPVAGSQ VGFSLVALTL LYAVLGALCI
YLLFYYARKG PSEA