| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0130 |
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| Symbol | |
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| ID | 8417934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 170552 |
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| End bp | 172195 |
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| Gene Length | 1644 bp |
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| Protein Length | 547 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 645036695 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_003197010 |
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| Protein GI | 258404268 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000105235 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.777409 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCAAA AAAAATACGA TTACATCATC GTTGGCGGGG GTTCTGCCGG AAGTGTGTTG
GCCAATCGGC TGAGCGCCAA CCCCAAAAAC AAGGTCCTCG TCCTCGAAGC GGGGCTTCCC
GATTACCGTC TTGATTTCCG CATCCACATG CCCGCGGCGC TGACCTACCC CTTGCAAGGG
AAGACCTACA ATTGGTGGTA CGAATCCGAT CCCGAGCCGT ACATGCACAA CCGGCGCATC
TATCAACCCC GCGGCAAGGT CCTGGGAGGG TCGAGCTGTA TCAACGGCAT GATCTATATC
CGCGGCAACG CCATGGATTA CGAAAAATGG GCCAGCTTTG AGGGATTGGA AGACTGGGAT
TACGCCCGCT GCCTGCCCTA TTTCAACCGC GCCGAATACC GGCTCAGTGG TGCGGACGCC
TACCAGGGCG TCGGCGGCCC CCTGTACCTG ACCACGCCGG AATGCGACAA TCCCCTGTTC
GAAGCCTTTT TCAAGGCCGT CCAGCAAGCC GGGCACCCTG TTGTGGACAA TGTCAACGGC
TACCGGCAGG AAGGATTTTC CAAATTTGAC GCCAATATCT ACCGCGGCCG GCGGTGGAAC
GCGGCCCGGG CCTACGTGCA CCCGGTCAAA AACCGCAAGA ACCTGGACAT CAGGTGCCGG
GCGATGAGTA CCCGGATCCT GTTCGAAGGC AAGAAGGCGA TCGGGGTAGA ATACAAGAAG
GGCAACACTA CCCATAAAGT CTACGGCGGC GAGATCATCA GCTGCGGTGG GGCCATCAAT
TCGCCCCAGC TCTTGCAGCT CTCCGGCGTC GGCGCCGGGG ATCACCTGCG CCAGCTCGGC
ATCGACGTGG TCCAGGACCT GCCCGGAGTC GGTGAAAACC TGCAGGACCA CCTCGAACTC
TATGTCCAAT GGGCGGCCAA AAAACCGGTC AGCATGTTCC CAGCCCTGAA GTGGTACAAC
CAGCCCAAGA TCGGCATGGA ATGGCTCTTT GCCAACAAGG GAGCGGCCGC GACCAACCAT
TTTGAGGCTG GCGGCTTTAT CCGCGGCAAC GACCAGGTCG ACTATCCGAA CCTGCAGTTC
CACTTCCTGC CCTTGGCGAT CCGCTACGAC GGCACCGCAC CCAACGAAGG ACACGGCTTC
CAGCTCCACG TCGGCCCCAT GAACTCCGAC GTCCGCGGTC GGGTCAAGAT TACCTCGGCC
GACCCCGGGG ACTATCCGAG CATCCTGTTC AACTACCTCT CCACGGAACA GGAACGCCGT
GAATGGGTTG AGGCCATACG CGCATCGCGC CACATCGTGG AACAGTCCGC TTTTGACGAA
TTGCGGGGCA AGGAACTCGC TCCGGGCAGC GACGCCCAGA CCGACGAGGA GATCCTGGAC
TTTGTTGCCC GGGAGGGCGA AAGCGCTTAC CATCCGAGTT GCACCTGCAA AATGGGCTAC
GACGATATGG CCGTGGTCGA CAGTGATCTG CGCGTGCACG GCGTCGAAAA CCTCCGCGTT
GTCGATGCCT CGATCATGCC CACCATCACC AACGGCAATA TCTACGCTCC GACAATGATG
CTCGCGGAAA AGGCGGCGGA CAAAATCCTG GGCAACACCC CCCCGGAACC GGCGCAAGCC
CCGTTTTACA AAACCGAAGT CTAG
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| Protein sequence | MAQKKYDYII VGGGSAGSVL ANRLSANPKN KVLVLEAGLP DYRLDFRIHM PAALTYPLQG
KTYNWWYESD PEPYMHNRRI YQPRGKVLGG SSCINGMIYI RGNAMDYEKW ASFEGLEDWD
YARCLPYFNR AEYRLSGADA YQGVGGPLYL TTPECDNPLF EAFFKAVQQA GHPVVDNVNG
YRQEGFSKFD ANIYRGRRWN AARAYVHPVK NRKNLDIRCR AMSTRILFEG KKAIGVEYKK
GNTTHKVYGG EIISCGGAIN SPQLLQLSGV GAGDHLRQLG IDVVQDLPGV GENLQDHLEL
YVQWAAKKPV SMFPALKWYN QPKIGMEWLF ANKGAAATNH FEAGGFIRGN DQVDYPNLQF
HFLPLAIRYD GTAPNEGHGF QLHVGPMNSD VRGRVKITSA DPGDYPSILF NYLSTEQERR
EWVEAIRASR HIVEQSAFDE LRGKELAPGS DAQTDEEILD FVAREGESAY HPSCTCKMGY
DDMAVVDSDL RVHGVENLRV VDASIMPTIT NGNIYAPTMM LAEKAADKIL GNTPPEPAQA
PFYKTEV
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