| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0088 |
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| Symbol | |
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| ID | 8417892 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 119747 |
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| End bp | 120562 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 645036653 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_003196968 |
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| Protein GI | 258404226 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGACC CCCGCCTTTT CGGTATCATC GGCCACCCCC TCGGCCACTC CCTGAGCCCG
GTACTGCACA ATTGGGCCCT GGAGGCCCAG GGGATCCCGG GCAGCTATCT GCGCTGGGAC
ATCCCGCCGG CGCGTCTGGC GGACTTCGTC ACCGCGGCCC GGCTCCTGCC CATCCACGGC
GCGAGTGTGA CCATCCCGCA CAAGGTTGAG GTGATCGACT ATCTGGACCG GATCACCGAC
AGGGCACGCC AAGCCGGGGC AGTCAACACC CTCTACTGGG AGCAGGACCG CCTCTGCGGG
ACCAACACCG ATAGCGAAGG ATTCCTGGCT CCCCTGCTGG CCAGTTCCCG CTTCCCCCGC
TCGGCCTTGA TTCTCGGCAA CGGGGGTGCG GCCCGGGCCT GTCTCGCCGC TCTTCTCGAA
CACGGGACCG AGGTCTGGAT CTGCGGGCGC AGACGGGAAC AATCCGAGGT CTTGGCCGCT
GCCTTTGGGG GGCATGTCCT GGACTGGGAA AGCCGCTCTA CCGCCTCGGC CGAACTCCTG
GTCAATTCCA CGCCCTTGGG CATGGCCGGT CAGCGGGAAT CCCTCTCGCC AATGCCGCAA
AACGGATCCC TGCAGAACTT TGCGACCGTC TACGAACTGA TCTACAACCC CATGGACACG
GTCTTGATCC GCCAAGCCCG CGAGGAAGGC TTGCAGACCA TCACCGGTCT GGCCATGTTC
GTCCACCAGG CCGCGGCCCA ATTCCGACTC TGGACCGGCC GGGAGATGGA CATCCCCGCC
GCCTGGGAGC GCTGCACCTC AGCCCTTGGG GCCTGA
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| Protein sequence | MQDPRLFGII GHPLGHSLSP VLHNWALEAQ GIPGSYLRWD IPPARLADFV TAARLLPIHG
ASVTIPHKVE VIDYLDRITD RARQAGAVNT LYWEQDRLCG TNTDSEGFLA PLLASSRFPR
SALILGNGGA ARACLAALLE HGTEVWICGR RREQSEVLAA AFGGHVLDWE SRSTASAELL
VNSTPLGMAG QRESLSPMPQ NGSLQNFATV YELIYNPMDT VLIRQAREEG LQTITGLAMF
VHQAAAQFRL WTGREMDIPA AWERCTSALG A
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