Gene Dret_0074 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_0074 
Symbol 
ID8417878 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp95582 
End bp97477 
Gene Length1896 bp 
Protein Length631 aa 
Translation table11 
GC content60% 
IMG OID645036639 
Productsigma54 specific transcriptional regulator, Fis family 
Protein accessionYP_003196954 
Protein GI258404212 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.384971 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAATGCA CGGCCATTCT GGATTCCACC ATACTTCGCC AAGAGATCCA GGCCTCCCAT 
GCCCGGTCCA AGGAATATGG TGTCAGCCGC ACGACGCGCA AAAACCAGGT CAAGCTCACG
CCCCTGGAAC TCAGCCAGCG TCAGGCCCAG AACAAAATTT TCCTGGAAGC GGTCATCGCC
CAGCTCTCCG AACTCTTTGA CCTTTTAAGC CCCGACGATT TCATGGTCGC GGTCGTCGAC
GGTGAGGGGT ACATCCTGCA CATGTTCGGC AGCGACAATA TCAAGGCCAA ATTCGCCGAA
CGCAATTGCG CCCCGGGATA TCGGTGGACA GAGCGCGATG TGGGCACCAC CGCCATCAGC
CTCTGTCTGG AGCGCCGCAT CGCCGTCCAA CTCAACGACA AGGACCATTA TTGTCAGCGG
GCGCACGGCT TCACCAGTTC CGCAGCTCCG GTCTTCGGCC ACGCCGGCAA TTTGCAGGGT
ATTCTTGTGG TTTCCGGGAA TTCGCAACTG GTCCACCCCC ACACCCTGTG CATGATTTCC
TCTGCAGCGC GCTCCGTAGA GCGGCAACTG CGCATCCTGC GCCGCAATTC CGAACTGGCC
ATGCACATCG GCCTCTTGGA CGCGGTTCTC GAGTCCACGA CCTCGGGCCT GATGGTCATC
GACAGTCAGG GCGTTATCTG GCGGGTCAAT CGCAAGGGGG GGCAGATTCT AAAAAAGACG
GATCTGGCCG GACAGGAAGT CTCGGTCTTG CAGGGATTGG ACCTTGATAT CGAGGACATC
CGGGCGAACC CGAATGCCTG GGTCAACCGG GAATGCACCC TGAAAAACGG CCGCCAGAAT
ATCCACATCC TGTTTTCGGC CCAGCCGGTG CTGGCCGGCG ATCAATCCAT GCTCGGCGTG
GTCCTGGAAT TCGAACCCAT CGATTCGGTG CGCAAACTGG CCAATAATAT TGCTGGAACC
AAAGCCTTCT TCACCTTCGA GAGCATGATC GGCTCCAGCG AATCCTTTCG TCGGGCCCAG
GAGATGGCCA AACGCGCGGC CCATTCCGAT TCCACCGTCT TGCTCCGCGG CGAAACCGGA
ACCGGCAAGG AACTCTTCGC TCAGGCCATT CACAACGCCA GCCGTCGTCG CAGCGCCCCG
TTTGTTCCTA TCAACTGCGG GGCGATTCCG GGCGAACTCC TGGAAAGCGA ACTCTTCGGC
TATGTCGACG GCGCCTTCAC CGGCGCTCAG AAAGGCGGCC GCCCCGGGAA ATTCGAACTC
GCCCACCGCG GCACCATTTT GTTGGACGAA ATCGGGGATA TGCCCCACGA TATGCAGGTC
AAACTCCTGC GCGTCCTGCA AACCGGCGAG GTCTACCGCA TCGGGGCCCG CAAGCCGACC
CTGGTCGACA CCCGGATCAT CGCCTGCACC CATGTTGATC TCGGCAAGGC GGTCGCCGCC
GGACGCTTCC GTGAAGATCT CTACTACCGG CTCAACGTCC TGCCCATCGT CATCCCGGCC
CTGCGTGAAC GGGGACGGGA CGATATCCTG GCCTTGACCG AATTCTTCCT CTCCCGCAAC
CGGGTCACCC CTCCACAGCT CACTGTCGGC GCTGTCAAAG CCCTGGAGAA CCATCCCTGG
CCGGGCAATG TCCGGGAACT GGAAAACACC ATCCAACGCG CCCTGCACCT GTGCGAAGAA
AATGAAATCG ACGCGGCTTG CCTCGGGGTT CCCGAAACCG CTGCCGCGGC CTCCAGCTCC
ACGCCCCGCG GGACGCTGGA AGAAATCGAG CGCTTGGCCA TCGAGCAGAC CCTCGAGGAT
ACCAAGGGCA ATATGGCGGA AACCGCCAAG ACCCTCGGCA TTTCCCGGGC CACGTTGTAC
CGGAAAGTCA AACGGTATTC GCTGGAAACA GGGTAG
 
Protein sequence
MECTAILDST ILRQEIQASH ARSKEYGVSR TTRKNQVKLT PLELSQRQAQ NKIFLEAVIA 
QLSELFDLLS PDDFMVAVVD GEGYILHMFG SDNIKAKFAE RNCAPGYRWT ERDVGTTAIS
LCLERRIAVQ LNDKDHYCQR AHGFTSSAAP VFGHAGNLQG ILVVSGNSQL VHPHTLCMIS
SAARSVERQL RILRRNSELA MHIGLLDAVL ESTTSGLMVI DSQGVIWRVN RKGGQILKKT
DLAGQEVSVL QGLDLDIEDI RANPNAWVNR ECTLKNGRQN IHILFSAQPV LAGDQSMLGV
VLEFEPIDSV RKLANNIAGT KAFFTFESMI GSSESFRRAQ EMAKRAAHSD STVLLRGETG
TGKELFAQAI HNASRRRSAP FVPINCGAIP GELLESELFG YVDGAFTGAQ KGGRPGKFEL
AHRGTILLDE IGDMPHDMQV KLLRVLQTGE VYRIGARKPT LVDTRIIACT HVDLGKAVAA
GRFREDLYYR LNVLPIVIPA LRERGRDDIL ALTEFFLSRN RVTPPQLTVG AVKALENHPW
PGNVRELENT IQRALHLCEE NEIDAACLGV PETAAAASSS TPRGTLEEIE RLAIEQTLED
TKGNMAETAK TLGISRATLY RKVKRYSLET G