Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_0073 |
Symbol | |
ID | 8417877 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | + |
Start bp | 94117 |
End bp | 95109 |
Gene Length | 993 bp |
Protein Length | 330 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 645036638 |
Product | Extracellular solute-binding protein |
Protein accession | YP_003196953 |
Protein GI | 258404211 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.303636 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGG CGCTTTGGAC GGTATTTATC GTCGGACTTG CCCTGAGCCT CTGTACTGCG GCTCAGGCCC GGACCTGGAA AGTGTCCCAC GTTCGCCCCC AGGACACTGC CATTGACAAA GATCTCAACG CTTTCGTGCA GGACGTTGAC GAGGCCACCA ACGGAAAAAT CAACATCAAA GTTTACGCTG CCAGTTCCTT GGGTGACTAC ACCGTCGTGC AGGAACGGGT CGGCCTCGGC GCTGTGGAAA TGGCCTGCCA GCCCCCGGCG ACCGGTGCGG ACAAGCGGTT TCAGATCCAA TACTTCCCAT ACTTGGTGAA AAACTACGAC CAAGCCAAGA AGAATTTTGG CCCTGACGGC CCCTTGCGCA AAGAAATCGG CAAGCTCTAC GGTGAGCAGG GCATCGAACT TCTGGCTGCC TGGCCGGTGT ACTTCGGCGG CATCGCCCTG AAAGAAGAAC CCAAGAACCC CGGTGACCCC ACGGCCAAAA AAGGTCTCAA GGTCCGCGTT CCGCCCATGA AGACCTTCCA GATGCTGGCC AATAACATTG GCTACATGGC GACACCGCTG CCGTTCTCGG AAGCCTTCAC CGCCGTGCAA ACCGGTGTTG TCGACGGCGT GATCGGTTCC GGTGCTGAAG GGTACTATGC TTCCTTCCGC GACGTGACCA ACTACTATGT CCCGATGAAC ACCCACTTTG AAGTCTGGTA CCTCATCGCC AATGAACGCA TGGTGGAAGG GCTGGACAAG GACGAAATGG CTGGCTTGAA AGCCGCTGCC CAGCGCTTTG AAGAAAACCG CTGGGACCAA GTGGTCGAAG ACCAGAAGAA AAATGAACAG CGCCTGGCTG ATTACGGTGC TGAAATCATC GAAATTACTC CTGAAGACCT GACGAAGACC GCCGAAATCG TGCGCGAAAA CGTCTGGCCT GAAATCCTGA GCGACGTTGG CACCGAATGG GGCCAATCCG TTCTGGATAA CATCAAGGAG TAG
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Protein sequence | MKKALWTVFI VGLALSLCTA AQARTWKVSH VRPQDTAIDK DLNAFVQDVD EATNGKINIK VYAASSLGDY TVVQERVGLG AVEMACQPPA TGADKRFQIQ YFPYLVKNYD QAKKNFGPDG PLRKEIGKLY GEQGIELLAA WPVYFGGIAL KEEPKNPGDP TAKKGLKVRV PPMKTFQMLA NNIGYMATPL PFSEAFTAVQ TGVVDGVIGS GAEGYYASFR DVTNYYVPMN THFEVWYLIA NERMVEGLDK DEMAGLKAAA QRFEENRWDQ VVEDQKKNEQ RLADYGAEII EITPEDLTKT AEIVRENVWP EILSDVGTEW GQSVLDNIKE
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