| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0036 |
|---|
| Symbol | |
|---|
| ID | 8417838 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 42778 |
|---|
| End bp | 44685 |
|---|
| Gene Length | 1908 bp |
|---|
| Protein Length | 635 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 645036599 |
|---|
| Product | 1,4-alpha-glucan branching enzyme |
|---|
| Protein accession | YP_003196916 |
|---|
| Protein GI | 258404174 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
|---|
| TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACGCA TGCGCTACGA CCACACCCTG CTGACTGATA TGGATATTTA TCTTTTTAAA
CAGGGGCGGC ATTACAAGCT TTATGACAAA CTCGGCGCAC ACCCGATGCA ACTCGACGGC
CAGGACGGGG TGCAATTTGG GGTCTGGGCG CCCAACGCCA CCGCTGTGGC GGTCATGGGG
GACTTCAACG ACTGGCAGAC CGCGAGCCAC CCGCTCCAGG TCCGCGGCGA CGGTTCTGGC
ATCTGGGAGG GGTTTGTCCC CGGTCTCGGG CAGGGGGAAT TGTATAAATA CGCGATTATC
GGTCAGGACG GACAGATGTT CTCCAAGACC GACCCCTTCG CTTTTTTCTG GGAGACCGCA
CCCCAGACGG CTTCTGTGGT CTGGGATCTC GACTACCGTT GGCAGGACGA GACCTGGATG
GAACAGCGAC ACGAGAGGAA CCATCTCAAC GCGCCCATGT CGGTCTACGA GGTCCATCCC
GGTTCCTGGC GCCAACGCGA CGGTCGTTTC CTCAGTTACC GCGAATTGGC CGAAGAACTC
GCGACGTACG TTCAGGAATG CGGTTTTACC CATGTCGAAT TCATGCCGGT CATGGAGCAT
CCTTTCTACG GGTCCTGGGG CTATCAGACC TTGGGCTTTT TTGCGCCTTC AAGCCGCTAT
GGCACACCGC AGGATTTCAT GTATCTCATG GAGTATCTGC ACCAGGAGGG CATCGGGGTC
ATCCTGGACT GGGTCCCTTC GCATTTTCCG CAGGACGCTC ACGGGCTGGT CTATTTCGAC
GGCACGCACT TGTTTGAGCA TGCCGATCCG AAGCTCGGTT TCCACCCGGA GTGGAAAAGC
GCTATTTTCA ATTACGCCCG CTATGAGGTG CAGTCGTTTC TGATTTCTAG CGCGAATTTC
TGGATTGACC GCTACCACGC TGACGGCCTC CGGGTCGATG GCGTGGCTTC CATGCTCTAT
CTGGATTACG CCCGGGAGGA CGGCGAATGG ATCCCCAATG AATACGGCGG CCGGGAAAAC
CTCGGGGCCA TCGATTTTCT GCGCAATCTC AATTCGGCGC TTTACGGCGA GCATCCGGAC
ATCATCACCG CCGCCGAGGA GTCCACGGAC TGGCCGATGG TGACCCGGCC GGTCCATGTC
GGCGGACTCG GCTTTGGCCT GAAATGGAAC ATGGGCTGGA TGCACGACAC CCTCGACTTC
CTCGCCAACG ACCCGGTGTA TCGCAAATAC CACCACAACC AGCTCACCTT CAGCATCATG
TATGCTTTTT CCGAGAATTT TATTCTGCCT CTGTCCCACG ACGAGGTGGT CTACGGCAAA
GGTTCCCTGA TCAATAAGAT GCCCGGGGAC GACTGGCAAA AACGGGCCAA TCTCCGCCTT
ATGCTCGGGT ATATGTACAC CCATCCCGGG AAAAAGCTGC TCTTTATGGG CGGCGAAATC
GGGCAGTGGA ACGAGTGGAA TCACGACACG GAGCTCGACT GGTGGCTGTT GGATAATCCC
GATCACCAGG GACTGCGCCG CTGGGTCGGT GATCTCAACA GGGTCTACCG CGACTACCCG
GCGTTGTCTG ATCTGGATTT CCAGTCCGGG GGCTTTGCCT GGATCGATTG CTCGGACTGG
GAACAGTCGG TGATCAGCTA TCTGCGCTGG GATGCCAGCG GCCAACGGCC ACTTCTCGTC
GTGGCCAACT TCACGCCAAT GCCGCGCGCC AACTATCGCA TCGGGGTCCC GTTCGCCGGC
TTGTGGCATG AGCTGCTCAA CAGCGACGCC CCCCTGTATG GCGGTTCCGG TCAGGGGAAT
ATGGGCGGTG TGACTTCGGT GCCTGTTCCG GCTCACGGCT TTTATGATTC CTTGACGTTG
ACCTTGCCGC CCCTGGCGGT GGAGGTCTTT ACTCCGGAGG GAGCATGA
|
|---|
| Protein sequence | MTRMRYDHTL LTDMDIYLFK QGRHYKLYDK LGAHPMQLDG QDGVQFGVWA PNATAVAVMG
DFNDWQTASH PLQVRGDGSG IWEGFVPGLG QGELYKYAII GQDGQMFSKT DPFAFFWETA
PQTASVVWDL DYRWQDETWM EQRHERNHLN APMSVYEVHP GSWRQRDGRF LSYRELAEEL
ATYVQECGFT HVEFMPVMEH PFYGSWGYQT LGFFAPSSRY GTPQDFMYLM EYLHQEGIGV
ILDWVPSHFP QDAHGLVYFD GTHLFEHADP KLGFHPEWKS AIFNYARYEV QSFLISSANF
WIDRYHADGL RVDGVASMLY LDYAREDGEW IPNEYGGREN LGAIDFLRNL NSALYGEHPD
IITAAEESTD WPMVTRPVHV GGLGFGLKWN MGWMHDTLDF LANDPVYRKY HHNQLTFSIM
YAFSENFILP LSHDEVVYGK GSLINKMPGD DWQKRANLRL MLGYMYTHPG KKLLFMGGEI
GQWNEWNHDT ELDWWLLDNP DHQGLRRWVG DLNRVYRDYP ALSDLDFQSG GFAWIDCSDW
EQSVISYLRW DASGQRPLLV VANFTPMPRA NYRIGVPFAG LWHELLNSDA PLYGGSGQGN
MGGVTSVPVP AHGFYDSLTL TLPPLAVEVF TPEGA
|
|---|
| |