| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0028 |
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| Symbol | |
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| ID | 8417830 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 30016 |
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| End bp | 31941 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 645036591 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003196908 |
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| Protein GI | 258404166 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCTCTG TTCTAGCAGC GGCACTTTGT GTCGCAGTAG TGTGTGTGGG GACGTCAGTG
GGGGCGCAGA ACGCCACCCA GCTCTCGGAA ATCGTGGTCA CGGCCACGGC GGCGCCAGCG
ACCGAGCAGG ATGTGCCGGT GAGCACGCAA ATTGTGGACC GCGAGGCCAT TGAGCGCTCC
GGGGCCCGGG ATCTGGAGGG GTTGCTTCAG CGGGAGATGG CCGCTGATTT CGAGATTCAG
CCCGGTGGCT ATTCCTCCTT TGGAATACGT GGATTTGAAT CCTATGAATC CTTGGGCGCT
GGCTTCGACT CTGGGGTGTT GGTCCTGCTT GATGGAACTC GTATTGCTAC CGGGACATTG
AGCCTCATTC CGCTGGATCT GGTCCAGCGG GTAGAGATCG TCCACGGGCC GGGGTCGGCC
CTGTACGGCG GTTCGGCCAT GGGTGGGGTG GTTAACGTGA TCACCCGCAC CGGCGGGCAG
GAAACCGCCG GCCAGGTGGG CGTGGGGTAC GGCAGTTGGG AGGAAAAAAC CGCCCACGTG
GGCGTGAGCG GGTGCAGTTC GGAGGAAACC TTCGGTTATG TCCTGGCCGG GTCCAAGCGC
ACTCGGGACG ACTACGCCAT CGGTGGGGGC AAGACGTACC CGAACACGGC CATTGATATG
CAGAGTTGGG GCGGGAAGCT CACCGCCGGG CCCGGCCAAC AGCACCAACT GCACGGCGTG
TATCTCGAAA GTCGGAACAA TGACCTGGGC AGCCCAGGGC CTCTAGATGA CAATGTTGCA
GAGAATTATA TCGACGACAC CCTCCGGCAT CTGCTGGTTA CCTATCAGGG CGAAAGCACA
GACGGAAAAC AGAGCTGGCG CTTGCAGCCG TTTCACTCTG AGCACGAGTA TGCGTTTTAT
TCAAATGACA TGTCCAAATA TATAACCCAG ATGGCCGGGG TGCGGGGTCA GTACAACCAC
CAGACCGCCC GCCTCGGCAC CCTGAGCCTG GGTGCGGAAT ACACGCAGAT CCAGGACGAG
CGTTCCGGCT CGTTGGTATA TGAGCCCAAC AGCGAATACG ACGTGACCGC CGTCTTTGCT
GAGCACCGTT TCGGCAGCGG GCCCTGGGAC CTCTGGGTGG GGGCGCGCTA CGACCACTAC
CGGGCGCGCA TCGAAAAAAC CTCGGAACTG AAGAACGTGG AAACCGGGAC GGAAACCTAC
GACGCGCTTA CCTGGCGCGT GGGGGGCAAG TATTGGCTGA CCGCGAACCT CGGGCTTCAC
GCCGCTGTGG GCACTGCCTT CCGGCCCCCG ATGGCCAAGG AGTTAACAGG GAAATTTACC
TCTTATGGTA CTACATATAT AGGTAACCCT AACCTCAAGT CGGAACATTC TGTAACCTAC
GAAACAGGTA TGGAATGGGG CGGCCAACAT GGCCGCATTG AAGGCACCGT TTTCCATACG
AAATACACAG ATAAAATAGA AGGACCAAGT TTTGGTGAGA CTGGAAAATA TGTAAACATC
GACGGCTGGA CTGTGCAGGG GCTGGAACTG CAAGGGCAAA CCGCATTCGA TTGGAGCGAG
ATGCTCATTG TCCGCCCCCA TGCCACGGCC CGGTACTATA CGAAACGGGA GCAGGAGGAT
TCCGGTGGAT CCAGTCAGAC TATTTTCCAG CTTCCTGAAT ATGAGGGTCA GATTGGACTA
GCTGTGGATC TTGGGGCCAA ACTCTCTTTG GATTCCTGGT TGGAAATCCG GGGGCCATGG
GAAGGAAAAA ATGTGGGGCG ACAAACGGAA TTTGCTGTGT TCGGATCCCG GATAAGCTAC
AGACCTGTTG TTGATTTGCA GGTCTATCTG GATGTGGAGA ACCTCTTTGA CAAGCGTTAT
AGTTACAAAA ACGGCTACCC CATGCCCGGG CGTTCGGTCG CGGCCGGGAT CGAATATACG
TTCTAG
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| Protein sequence | MRSVLAAALC VAVVCVGTSV GAQNATQLSE IVVTATAAPA TEQDVPVSTQ IVDREAIERS
GARDLEGLLQ REMAADFEIQ PGGYSSFGIR GFESYESLGA GFDSGVLVLL DGTRIATGTL
SLIPLDLVQR VEIVHGPGSA LYGGSAMGGV VNVITRTGGQ ETAGQVGVGY GSWEEKTAHV
GVSGCSSEET FGYVLAGSKR TRDDYAIGGG KTYPNTAIDM QSWGGKLTAG PGQQHQLHGV
YLESRNNDLG SPGPLDDNVA ENYIDDTLRH LLVTYQGEST DGKQSWRLQP FHSEHEYAFY
SNDMSKYITQ MAGVRGQYNH QTARLGTLSL GAEYTQIQDE RSGSLVYEPN SEYDVTAVFA
EHRFGSGPWD LWVGARYDHY RARIEKTSEL KNVETGTETY DALTWRVGGK YWLTANLGLH
AAVGTAFRPP MAKELTGKFT SYGTTYIGNP NLKSEHSVTY ETGMEWGGQH GRIEGTVFHT
KYTDKIEGPS FGETGKYVNI DGWTVQGLEL QGQTAFDWSE MLIVRPHATA RYYTKREQED
SGGSSQTIFQ LPEYEGQIGL AVDLGAKLSL DSWLEIRGPW EGKNVGRQTE FAVFGSRISY
RPVVDLQVYL DVENLFDKRY SYKNGYPMPG RSVAAGIEYT F
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