Gene Dret_0020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_0020 
Symbol 
ID8417822 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp21893 
End bp22672 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content60% 
IMG OID645036583 
ProductDihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain protein 
Protein accessionYP_003196900 
Protein GI258404158 
COG category[C] Energy production and conversion
[H] Coenzyme transport and metabolism 
COG ID[COG0543] 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTGAAC CACAATGCCT CGAACTCCGT GTGACCTCCC TGGAATCACC GGATAATGAC 
CTCTTCTACC ATCTGAGTCT GGAATCGCCG CAATGGCAGT GGCGTCCCGG ACAATTCGCC
ATGCTGCGCC CAACAAGCTG GCGGCATGAG CCGTTGTGGG CCCGCCCCTT CTCCATTTCC
GACCAGGATA CCAACGGGCT GCATTTCTTT TTCCAGCGCA TGGGCAGCGG CACAGATCTG
CTGAGTCAGC TCCGCCCCGG CGATGTGGTC ACTGTCTGGG GCCCTCTGGG AAACGGATTC
ACCATCTCCC ATACGACGCC GACCATGATC CTGGCCGGAG GCATGGGCCT AGCCCCTTTC
ATGGGGCTTA TCCGCCACCA TCCGATCCCC CAGAACCTGG AACTGTTTTT CGGCCACCGC
CAGCCCCTTG CCAACTACCC GTTTTCGGAA ATCGAAGACC GCATTCTCGC CTGGCAGGTA
CGCGAACAAG GGCCCGAGGA TCTTGAAAAA CTCTTTCGGG CCATTGAAGT CAAAATCAAA
GGATACAGCA TCGACGGCAA CCTCCTCGCT TGCGGGCCAC TGCCCTTCTT GCGCCGCATC
CAGAAGCTGG CCCTGGACCA TAACGCCAAC ACCCAGCTCT CCCTGGAAAA CCGTATGGCC
TGCGGCGTTG GGGCCTGTCT CGGCTGCACC GTGCCCACCA AATCCGGCGA GCTGGTCCAG
GCCTGCACCC AGGGGCCTGT TTTTAAAGCT GACGCCGTCG ATCTTTCGGG AGAACTCTAA
 
Protein sequence
MPEPQCLELR VTSLESPDND LFYHLSLESP QWQWRPGQFA MLRPTSWRHE PLWARPFSIS 
DQDTNGLHFF FQRMGSGTDL LSQLRPGDVV TVWGPLGNGF TISHTTPTMI LAGGMGLAPF
MGLIRHHPIP QNLELFFGHR QPLANYPFSE IEDRILAWQV REQGPEDLEK LFRAIEVKIK
GYSIDGNLLA CGPLPFLRRI QKLALDHNAN TQLSLENRMA CGVGACLGCT VPTKSGELVQ
ACTQGPVFKA DAVDLSGEL