| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtox_4288 |
|---|
| Symbol | |
|---|
| ID | 8431302 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum acetoxidans DSM 771 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013216 |
|---|
| Strand | - |
|---|
| Start bp | 4454487 |
|---|
| End bp | 4456997 |
|---|
| Gene Length | 2511 bp |
|---|
| Protein Length | 836 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 645036480 |
|---|
| Product | CRISPR-associated helicase Cas3 |
|---|
| Protein accession | YP_003193578 |
|---|
| Protein GI | 258517356 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1203] Predicted helicases |
|---|
| TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3
[TIGR01596] CRISPR-associated endonuclease Cas3-HD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCATATT GGGCTCATTA TGATCAGGAA AAGGAAATTA AGCAAACATT AAAGGAGCAC
CTGAGTTCCG TGGCTGCCAT GGCGCGGGAT CGAGTTTCTC CCGGTGTGCA ATTTAAGGAC
ATACCTTCTT CCATAGTTAA AGAACTGGCT TATTGGATGG GTTATTTTCA CGATTTGGGG
AAATATACAG ATTACTTCCA GGACTATTTA ACAAAAAATA AAAAATCAAA ATTTAAAGAA
CATGCTCATA TATCCGCCTG CTGTGTATAT TCTTTCTTGC TGGATCGGGT GATTGATTTT
TCTGACGACT GGCAGAAGAA AATAACCGCT TTTCTTATCT ATTTATGTTC ACGTAAACAT
CATGGAACCC TGAGTTTGGA AGGTTTATTT TCAATCTCCC GGGAAAAAGA AATATGGAAG
CTCCTGCAGG CTGCAGAATA TAATTTGCTG GAAAAATTAC CGGTGATTTT ACAGGATGCC
GGTTTATCAG ACCGGATTTC CGGGGTGGAA CTCAAAAAAT ATTTATCGGT AGATGTATTG
ATAAAAAGTA AATCTCTGGC ACGAACGGGG CAATATCTTA ACAGTGGCAG AGGAGAGGAT
GAAAGATGGT TTTTTTTAGC CATTTATTTA TTTTCACTGC TGATTGATTC GGATAAACTG
GATTCCGGTG GATTGAAGCC CGGAGAGGTA AAAAGCTGTC CATCCGATCA GGTGAGTAAA
TATCTAAACA AAAAGTTGGA GCAGTTAAAG GATAAAAGAA ATGTATCTTT ATGGGAACGA
AGGAACAATG CCCGTAAGAC CATGCTGGGA ATTATAGAAG GCTTGAGTGA TGAAGAGATT
AAAGGTACCG GATTTTTCAC TATAACTGCC CCCACGGGTA TCGGAAAAAC CCTTTCATCT
CTGCAGTGTG CTCTGTGTTT GCAGGAGCGG ATAAAGGTAT TGGAAAAATA TACGCCCCGC
ATTATTGCTG CCATTCCTTT CATAAATATC ATTGAACAAA ATAAAAAAGA GTATGAGCAG
GTTTTTGGAA AAGAGTTAAA GCTGATCGTG CATCACAGGC TCGGAGATTT TTCGGTACAA
GCTTCTTCCA GGGAAGAGAT TTCTGTTGAT CAGGCGCTTT TAGAAGTGGA GTCCTGGGAA
GGGGATGTTA TTTTAACTAC CTTTGTTCAA TTATTTCAAT CTATCATTAC AGGAAACAAC
CGCTTGCTGA AAAAGTTTAA CAAGTTGGCC TGCAGTATAG TTATTCTTGA TGAAGCCCAG
GCCGTTCCGG AATACTACAT GCCGCTAATA GGGGCGGTAT TGCAAAAAAT GACCGAATTT
TTAGGCACCA GATTTATCTT AATGACAGCG ACACAACCAA AAATTTTAGA ATTCGGTAAC
TTATTGCTGG GGTCTTCAGG CGGTAAGGCT AAGGCAGTGC CGTTACTGCC TGATTTTGAG
GGATATTTTG AAAAACTGAC AAGAACCAAA TTTGTATCTT TATTGAAAAA AAATAGGTTG
GATACCGGAG CCTTTCTTGA ATTGTTTCAG GAAAAGTGGG ACGGAAAAAA ATCGGTATTG
ATTGTTGTTA ATACAATAAA GAGAAGCATT GAGGTTTATC GCGAAATAAA AAAGCTGTTA
AAAGATCAGG CATGCAATAT TCCCGTTTGC TACCTATCAA CAAATATAAT GCCCCGGCAA
AGAAGAGAGG TTATTAAGAA TGTAAAGGAT AAGCTTGAGA ATAAGGAAAC TGTAATTCTT
GTTTCTACAC AAACTATTGA AGCCGGTGTT GATTTGGATT TTGATATGGC TTTTCGTGAT
TTTGCGCCTA TTGACTCATT AATTCAAACG GCCGGGCGGG TCAACCGGGA AGGGCGAAAG
GGAGAGTATC TGCCGGTTTA TATTGTTCAG TTGGAATCTG ACAACCATTA TGTTTATGAA
TTGACGCACC GTCACTCTAC AATGAAATTG CTGCAAGCAG CGGATGAAAT TAAGGAGCCC
CAGTATGGAA GGTTGGCGGA TGAATATTAT ACTTTGGCTT TGGCAAGGGG TATATCAGAC
AGGTCTAAAG AACTATGGCA AGAAGGTATT ATGAAGCTAA ACTTTGAAAA GTTGAAAGAG
TTTCAATTGA TTCAAAATAC CGGGGAAGTT GTTGATGTTT TTGTGGAAGA TTGTTTGAAA
GCTACTCAAT TGGCCAATGC TTATGAGGAA TTATTGCGAT ATAAAGAGTA TGATTTGAGT
TGCGAGTCAG GTGCTTTATC GAAAGTTATT GATAAGGGCG TTATACCAAA TTGTAACGGT
AAGTTAAGTG TTTTTGAGAG AAAAGCTATT CTACGTTTAA TTCTGGCCAA AGTGAGTGAT
TTTATCATTC AAGTTAGGGT TTCCAGGTTA AAGGAGAACA GACCTGTTGA ATTTAGAGTA
CGGGGAGATG TCGAATCCTC AATGTATTGG ATTCCGCCGG GCCAAAAAAA AGAATATTAT
GATGACGAAA CCGGTTTTAT CAGTGAAACA GGGGAAGCAT TTATTTTATA A
|
|---|
| Protein sequence | MPYWAHYDQE KEIKQTLKEH LSSVAAMARD RVSPGVQFKD IPSSIVKELA YWMGYFHDLG
KYTDYFQDYL TKNKKSKFKE HAHISACCVY SFLLDRVIDF SDDWQKKITA FLIYLCSRKH
HGTLSLEGLF SISREKEIWK LLQAAEYNLL EKLPVILQDA GLSDRISGVE LKKYLSVDVL
IKSKSLARTG QYLNSGRGED ERWFFLAIYL FSLLIDSDKL DSGGLKPGEV KSCPSDQVSK
YLNKKLEQLK DKRNVSLWER RNNARKTMLG IIEGLSDEEI KGTGFFTITA PTGIGKTLSS
LQCALCLQER IKVLEKYTPR IIAAIPFINI IEQNKKEYEQ VFGKELKLIV HHRLGDFSVQ
ASSREEISVD QALLEVESWE GDVILTTFVQ LFQSIITGNN RLLKKFNKLA CSIVILDEAQ
AVPEYYMPLI GAVLQKMTEF LGTRFILMTA TQPKILEFGN LLLGSSGGKA KAVPLLPDFE
GYFEKLTRTK FVSLLKKNRL DTGAFLELFQ EKWDGKKSVL IVVNTIKRSI EVYREIKKLL
KDQACNIPVC YLSTNIMPRQ RREVIKNVKD KLENKETVIL VSTQTIEAGV DLDFDMAFRD
FAPIDSLIQT AGRVNREGRK GEYLPVYIVQ LESDNHYVYE LTHRHSTMKL LQAADEIKEP
QYGRLADEYY TLALARGISD RSKELWQEGI MKLNFEKLKE FQLIQNTGEV VDVFVEDCLK
ATQLANAYEE LLRYKEYDLS CESGALSKVI DKGVIPNCNG KLSVFERKAI LRLILAKVSD
FIIQVRVSRL KENRPVEFRV RGDVESSMYW IPPGQKKEYY DDETGFISET GEAFIL
|
|---|
| |