| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dtox_0874 |
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| Symbol | |
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| ID | 8427813 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum acetoxidans DSM 771 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013216 |
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| Strand | + |
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| Start bp | 883959 |
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| End bp | 889157 |
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| Gene Length | 5199 bp |
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| Protein Length | 1732 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 645033220 |
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| Product | YD repeat protein |
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| Protein accession | YP_003190394 |
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| Protein GI | 258514172 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.409966 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.012689 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTTTC ATAAAGCGAA ATTATTTTGT TTAATCTTTC TAGTAGTAAT ACTATTATCT
CTAACCGCCG GTTTCCCTGC AATAATATTT GGAACCGAAT TAGAGCAATC AACTGATTTA
ATAAAAGAAC AAATCTCTAA TACAGATAAA GATGAAATAT TATATTCGAT TAAACAGGAT
GAATCTTATT TATTGGAACA AGACCCTTCC AGTAATAATA AAATTTTCAT TAAACATATA
AAACATATGC CTGATGATAA TATAATTGAA CCGAAACCCT TTGCTCCTGT TAGGGATTCA
TCTGTTTACA TTTCCCCAAA GCAAACTGTT ACAAAAGAAG TATATAAAAC CAATACACAT
GATTTAACAT TGGTAAGCGA AAAAGAATTA CAAAAGTCGG TAACCAGCGT AGTATATGGT
TCATTTTCTA TTAGAAACAA GCAGGGTTTA TATACTGCCA AATTTAGTGA TAAAATTGAA
AAAAATGTAT TAAAATTTTC TTATGGAAAT ACTGAATTAT TTCTTGCTCC CTTAGAAGCT
GTTTCTGTTA GCGGTAAAGT ATATGAAAAC ACGATAAATT ACGAAAATAT ATTTCCTAAT
ACTGACCTGC GTTATATTTT AGAAGAAAAT CGACTCAAGG AAGAAATCGT TACTAAGAAG
TATACCGGAC AAAGTGAATT TTCTTTTCAG TTAAGTGTAA CCGGTGCTGT TTATGCATTT
TCAGAAGACG ATAGAATTTA TTTTATCGAA CCGGATACTG GCAGGATATC CTTTTATATG
CCAAGGCCAT ACGCTTTGGA TAGCAATGGC AATCGCTGTG ATGCAAATAA TTTCGAACTG
AGCAAAGAAG GAATTCTACA ATTTTCCATA AACTCAAATT GGCTTCAAAA GGCTGTTTAT
CCTGTTATCA TTGATCCAAC AATCAATCTG GCGGGAAGTG ACGGATCAGG AATAGAGTCT
TATTGGAACT ATTCAAAAAT AGATTTAGGA GGGGGATGGG AAAGCTCCGT TAACACCTGC
AATCTCAATC TGGTTTTGAG TAAAGGGCTA TTTCTTATTC CTGGTCGTGG TTTGCCCATA
GGAGACAGCT TAACATACAA TTCCATTGAC ACCAGAGGTG GCCCTGTAGG TATCGGTTGG
CATCTTGGCA CCGATATCAG TTTAACCGAA CGCCAGGATG GAACTGTCCT TTATGTGGAA
GGAGATGGTT CCTCACACAT TTTTACTCCC AATGGAACCG GCGGTTACAC ATCGCCTAAA
GGTATATACC TCACTTTACA GAAACTAGGG TCAGGTAATT TTAAAATCAC CGATAAAAAG
CAAAACATAT ATACTTTTGT AAACGGAAAA CCCAGTAAGT TTGTTGATCG AGATAATAAT
ACCACGACCT TCACTTATGA CGCAAGCGGG CGTCTTTACC AATTAAGCGA TCCTTCAGAT
CGGAAGCTTA CGTATACTTA CAACACCTCT GGCCAGTTAT CTGCCATGAC AGATCCGGGC
AACCGGACCT ATCAGTTGGC TTACCAGAAC AGCCGCCTAG CAGCTGTCAC AGATCCGCTA
AATAAAACGG TTACTTTTGC TTATGATGCA AATGGATATT TAGCCTCCTT AACCGATCCG
TTGAACCGTG TTACTTCATT TATAAATAGT TCTGATGGAA AACTTCAAAC TATCAGGGAT
GCCAGGACAA ATGGCCAGGA TATTTATGAT ACATTATTTA GCCAGAGTAC CCAAACAAAC
ACGATAGTAA CAACTGTAAT AGATCCGGGA AGTCATAGAT TTACCTTTAC CCATGATTAC
AGTACAGGCA ATTTAACAAA ATACCAAGAT CAATTGGGCA ATTCCTGGCA ATACAGCTGG
TCCAGCAACA GCCTTATAAC GGCCCAGGAT GCTAAAGGTA CGATAACATA CGAATATGAT
ACCAAGGGAA ATATTATCAA AAAAACTATC ACCGTAGACA ACGATGCCAA CAACAACATC
ATCCAAACCA TGACTTATGA CGAATATAAC CAGCTTCTCG AGTTCGTAGA CGGTAGCGGC
AGAAAAACCT CTTATAAGTA TGATAACAGA GGAAACCTTC TTTCCACCGG TAATCCTGAT
ATTAAAGAGT CGAACGGCAG GAGATACGAC CAATACGGCA ATGTTATAGA ATATAGTCCC
AGACTCTCAA GTACTTGTAA CCTTCTCAAT AATGGCAGTT TCGAAAACTC AACGAATTAC
TGGACTCGGA TTGCCGGCAA TGCCACGGTT AGCATGGAAG GATGCCAGCT TTACGGTAAT
TCCGCTTTGA AAATGAGCAG CAATACATAT ACCACTGACT TGTTTTATCA AAGAGTTACT
GGTTTGCATA ACTATGACAA GCTTACCCTG AGGGCTGATA TTAAACTTGA CAACGTTCAT
GGTGGTGTCA TAATCAAACT GTATTACGAC CCGAGTCACT GGGAATCTTA TGTATGCTCG
GGTAGCGGTA CCACACCCAT TGTGATAACC TCAACCGTGC CTTACGGAAC TGGCTCCAGA
TATGTCGATG TTTATATTGG TTTAAATAAC GCCACTGGTA CAGCCTGGAT TGACGGAGTT
CAGCTTGAAA ACATGTGCCA ATCAGGCAAT GGCTACACTC TTAGTGCTTA TAATTCAGTT
GAGGACAGCA GCTTTGAAAA TTATGCTCGG AACTGGACTA TTGGTTCAAA TTTTTCTATT
TATACAGGCG TAGCCTGGGA AGGGGTAAGA TCGGGACTGT TATATCATTC CACAAATAAT
CTATCTTCGT TTTATCAGGA TATTCCTGTT TATGGCGGGG AATCAATGAC TCTTTCGGGA
ATGGTATCTG CGTCATGTGA AGGTACAGGC GCCTACTTTA AAGTCGATTA TTATGATGCG
TCGAATCAGA TAATCCCTGG TTATACCGTG CAAACTGGTT CTGTTAAAAC TTATGAAAAG
TGGGGTGAAT TTACCCGGCT TTCATGTTTG GCAATTACAC CCTCCCAGGC CAAATATGCG
CGACTACGAG CTGTACTCGA TGGCAAGGGC AAGGCATTTT TTGACTCTAT TAAACTAGTG
CATAGAGATG GTGAAAAATA TACTTACAGT GCGTCAGGGA ACTACTTGAC TACTTCAGAA
GATGCTTTAG GCAAACAGAG TAGACGAGTA TATAATGAGA ATACCGGTAC TCAATTAAGT
TTCACAGACG CTTCCAATAA TACTACGTAT TATGACTACG ACAATTTGAA CCGTTTAGTC
AGAGTGACTG ACCCGATGTC TGGACATGCC TATTATGAGT ATGACCCTGT GAGCAATCTC
ACAGCCACTC GAGATCCTAA GAGTTCAAGC TCAACAGACA GCACATACCG AACATTGTTT
GCACATAACA ACATAAACCA GTTAAACACC CTTGCCGATC CATTGCTAAG GAATATATCA
AACACTTATG ACCGATCTAG TAATTTAACA AGAGTTTCCT TACCAAACGG GCTGCAAATA
AATTACACAT ACGACAGTGC AAACCGGCTT ACCAGTAAGA TATTGGATAA TGGAAAACAC
TACAACTATT CTTATGACGG TGCTAATAAT CTGATTAGCG TTACCGATCA GGACAATAAA
AGTTGTTTGT GGGATTACGA CGGTGCTGGT AGAGTTAAGT ACTCGACAGA TTCCTTTGGT
TACCGTTTGG ATTATACGTG GGATAAAAGT AATAATCTTG TAAAGGAAAG TTACCCACCC
AGTACCTATG CTTGTATAAG TTATATTTAT GGAAGTGACA ATAGACTTTT GCAAGTTAAT
GGAATAGGGG ATAGTTTTAA TTACTATTAT GATGAAAGTG GCCGTGTTTT TAAAATAATT
TATGGTAATG GATTATACTC TCTAAAAAAT ATTATATATT ATCCCAATGG TTGGTGTAAA
AATATTCAGA ATTGCCTTAG AGGTGGAGAG CGCTATGTTT ATGATTATTC CTACTATAAT
AATGGAAATA TCTCTTCCAT CTCGTCCTGG GCAGGTATTG ATAACTTTGT GTATGATGCT
AATGGAAGAT TGACATCCTG GTCTTTTACA CCCCAAAATG GTAGTCCTGT TCAGGAAAGC
TATATATATG ACGCTGCAGG GAACATGTTG AGAAAAGGAA GTAGAGATTT TTCTTATAAC
AACGCGAATC AGATAACAAA TAGCGGTTTC ACCTATGACA ATAACGGTAA TATGACCAGT
GATGGAACCT TTAACTATAC TTATGATACA GAAAGTCAAT TGACTCAAGT AAAAAGGGTA
TCCGATAATA GTCTGGTTGC AACCTACAAC TATAGACATG ATGGATTGCG AACAAGTAAG
ACTGTATATA GTGGACAGAC ATCCCAGACT ACATATTTCA ACTGGGATGC ATTCGGGCGC
CTGGTACGTG AAAGTGATTC AGCAGGTAAC GTCTCTTTCT ATAATTACGA CAACCAAGGG
AAGCTAGTTT GTTTTAGAAA GAACAATTAC ACCTATGAAG TACATCTTAA TTTAAGAGGT
GATGTTTATT TATTAACTAA CATTGATGGC GGTTTTTATG CTAAATACAA CTACGATCCA
TGGGGTAACC AAATTTCTTA TTCTGGTTGG ATTTCTGCTC CTTTTAGGTA TGCCGGATAC
TACTATGACG AGGAGACAGG GTTATATTAT CTGAAGAGCA GGTACTATAG TCCAGCGTTG
GGGAGGTTTT TGACGAAGGA TTCGATTAAA TATATTAAGT ATAAAAATCC ACAAACACTG
AATCTTTATA GCTATGCGGG TAGCAATCCT GTAAATAATG TAGATCCGAC AGGGGAGATT
CCTGTTCGCG CAACTTGGAA AGCATTTGAA GACAAACTTG GGGAATTACT TGATACCGCA
AAAAATAGCA AAAAAGGGCT TGGAAACAGA ATTGTTGATT ACATCACAAA GACAGGTGAA
GCTTGGGAAG CCAAATCGGG TGAGTATATA TCGAATAGTC CACAGTTAAA AGCTTTTATG
AGACAATTTG GAGATAAGTT TAGATTAGTT ATTAATGAAA CAACAGAGTG TTCAAAACCC
CTTCTTGAGA ATCTTCGAGA TACTCGCGGG AAATTATATA GAATGGTTAA TGGAAAGCTT
ATTCCGATCA ATATCGAAGA AGCTTTGAAA GCACCACCTG CGATTTTTGT ATTCCCACCT
GGTTGGAAGA ACTGGTTTCA AGAAGATTAT GGAACTTAA
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| Protein sequence | MAFHKAKLFC LIFLVVILLS LTAGFPAIIF GTELEQSTDL IKEQISNTDK DEILYSIKQD
ESYLLEQDPS SNNKIFIKHI KHMPDDNIIE PKPFAPVRDS SVYISPKQTV TKEVYKTNTH
DLTLVSEKEL QKSVTSVVYG SFSIRNKQGL YTAKFSDKIE KNVLKFSYGN TELFLAPLEA
VSVSGKVYEN TINYENIFPN TDLRYILEEN RLKEEIVTKK YTGQSEFSFQ LSVTGAVYAF
SEDDRIYFIE PDTGRISFYM PRPYALDSNG NRCDANNFEL SKEGILQFSI NSNWLQKAVY
PVIIDPTINL AGSDGSGIES YWNYSKIDLG GGWESSVNTC NLNLVLSKGL FLIPGRGLPI
GDSLTYNSID TRGGPVGIGW HLGTDISLTE RQDGTVLYVE GDGSSHIFTP NGTGGYTSPK
GIYLTLQKLG SGNFKITDKK QNIYTFVNGK PSKFVDRDNN TTTFTYDASG RLYQLSDPSD
RKLTYTYNTS GQLSAMTDPG NRTYQLAYQN SRLAAVTDPL NKTVTFAYDA NGYLASLTDP
LNRVTSFINS SDGKLQTIRD ARTNGQDIYD TLFSQSTQTN TIVTTVIDPG SHRFTFTHDY
STGNLTKYQD QLGNSWQYSW SSNSLITAQD AKGTITYEYD TKGNIIKKTI TVDNDANNNI
IQTMTYDEYN QLLEFVDGSG RKTSYKYDNR GNLLSTGNPD IKESNGRRYD QYGNVIEYSP
RLSSTCNLLN NGSFENSTNY WTRIAGNATV SMEGCQLYGN SALKMSSNTY TTDLFYQRVT
GLHNYDKLTL RADIKLDNVH GGVIIKLYYD PSHWESYVCS GSGTTPIVIT STVPYGTGSR
YVDVYIGLNN ATGTAWIDGV QLENMCQSGN GYTLSAYNSV EDSSFENYAR NWTIGSNFSI
YTGVAWEGVR SGLLYHSTNN LSSFYQDIPV YGGESMTLSG MVSASCEGTG AYFKVDYYDA
SNQIIPGYTV QTGSVKTYEK WGEFTRLSCL AITPSQAKYA RLRAVLDGKG KAFFDSIKLV
HRDGEKYTYS ASGNYLTTSE DALGKQSRRV YNENTGTQLS FTDASNNTTY YDYDNLNRLV
RVTDPMSGHA YYEYDPVSNL TATRDPKSSS STDSTYRTLF AHNNINQLNT LADPLLRNIS
NTYDRSSNLT RVSLPNGLQI NYTYDSANRL TSKILDNGKH YNYSYDGANN LISVTDQDNK
SCLWDYDGAG RVKYSTDSFG YRLDYTWDKS NNLVKESYPP STYACISYIY GSDNRLLQVN
GIGDSFNYYY DESGRVFKII YGNGLYSLKN IIYYPNGWCK NIQNCLRGGE RYVYDYSYYN
NGNISSISSW AGIDNFVYDA NGRLTSWSFT PQNGSPVQES YIYDAAGNML RKGSRDFSYN
NANQITNSGF TYDNNGNMTS DGTFNYTYDT ESQLTQVKRV SDNSLVATYN YRHDGLRTSK
TVYSGQTSQT TYFNWDAFGR LVRESDSAGN VSFYNYDNQG KLVCFRKNNY TYEVHLNLRG
DVYLLTNIDG GFYAKYNYDP WGNQISYSGW ISAPFRYAGY YYDEETGLYY LKSRYYSPAL
GRFLTKDSIK YIKYKNPQTL NLYSYAGSNP VNNVDPTGEI PVRATWKAFE DKLGELLDTA
KNSKKGLGNR IVDYITKTGE AWEAKSGEYI SNSPQLKAFM RQFGDKFRLV INETTECSKP
LLENLRDTRG KLYRMVNGKL IPINIEEALK APPAIFVFPP GWKNWFQEDY GT
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