Gene Dtox_0702 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDtox_0702 
SymbolfliR 
ID8427640 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum acetoxidans DSM 771 
KingdomBacteria 
Replicon accessionNC_013216 
Strand
Start bp714501 
End bp715268 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content40% 
IMG OID645033064 
Productflagellar biosynthesis protein FliR 
Protein accessionYP_003190239 
Protein GI258514017 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[N] Cell motility 
COG ID[COG1684] Flagellar biosynthesis pathway, component FliR 
TIGRFAM ID[TIGR01401] type III secretion protein SpaR/YscT/HrcT
[TIGR01400] flagellar biosynthetic protein FliR 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.310236 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGATAGATA TGGATTTGTT AGTGGTCTTC TTTTTAGTTT TTATAAGGAT AACCGCTTTT 
ATGATGACCG CACCGTTTTT TGAGTATCGC AATATACCCA ATCTGCTGAA GATAGGTTTT
TCTCTGTTGC TGGCAGGGAT TGTTTTTCCT GTTATAAAAA CATCCGGTTT TAGTGTGCCC
GGTGGAGTTT TGGGCTATAT CCTGGCTGTA ATGGCGGAGG CAGGTGTAGG CTTGATGCTT
GGTTTGATAG CCTCTTTCAT TTTTCACGGC ATTCGTATGG CCGGTCAGCT CATAGATCTT
CAGATAGGCT TTGCCATGGC CATGGTTTTT GACCCGTTAA GTGAAATGCA GACAACTATT
ATAGCCAGAT TTTTAAATCT TTTGGCTTTA ATATTTTTTC TTAATGTAAA CGGTCATTAC
TATTTGATTG AGAGTTTGGT CAAAAGCTAT GATCTGGTGC CTCTGACAGC AATGGCAATA
AAGTCGGGTG TCGTTCTCAC TGTAGTTAAG TTTTTCAGCG GGATGTTTGC CCTGGCTTTT
CAGATAAGCG CGCCAATTAT AGCCGTATTG GTGATTATAG ATTTATCATT GGGGTTTGTT
TCCAGAACAG TTCCGCAGTT GAATGTTTTT ATGTTAGGTT TTCCCGTGAA GATTGTGGTG
GGGATTTTAA CACTCAGTGT TGTTGTTCCT GTGCTGGGCA CATTGCTGCA GGACGTTTTT
AAAACTATGC ATAATAATAT GTTAATCTTA TTGCGGGGTC TTACATAA
 
Protein sequence
MIDMDLLVVF FLVFIRITAF MMTAPFFEYR NIPNLLKIGF SLLLAGIVFP VIKTSGFSVP 
GGVLGYILAV MAEAGVGLML GLIASFIFHG IRMAGQLIDL QIGFAMAMVF DPLSEMQTTI
IARFLNLLAL IFFLNVNGHY YLIESLVKSY DLVPLTAMAI KSGVVLTVVK FFSGMFALAF
QISAPIIAVL VIIDLSLGFV SRTVPQLNVF MLGFPVKIVV GILTLSVVVP VLGTLLQDVF
KTMHNNMLIL LRGLT