Gene Dtox_0059 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDtox_0059 
Symbolrho 
ID8426981 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum acetoxidans DSM 771 
KingdomBacteria 
Replicon accessionNC_013216 
Strand
Start bp64192 
End bp65502 
Gene Length1311 bp 
Protein Length436 aa 
Translation table11 
GC content43% 
IMG OID645032454 
Producttranscription termination factor Rho 
Protein accessionYP_003189645 
Protein GI258513423 
COG category[K] Transcription 
COG ID[COG1158] Transcription termination factor 
TIGRFAM ID[TIGR00767] transcription termination factor Rho 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.121136 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0035916 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGAACCAGT CTGATTTAGA AGCTAAAACA ATGGTTGAGC TGTATAAAAT AGCCAAGGAA 
TTGGAAATAG TCGGTTACTC AAAGCTTCGC AAGAAAGAAT TAATATTTGA AATTATTAAA
ATTAAGACGG AAAAAACCGG ATTGTTGTTT GCTTCCGGCG TGTTGGAAAT TTTACCTGAC
GGTTATGGTT TTTTAAGACC GTTTAAATAT CATCCAAGTT ATGATGATAT CTATGTATCC
GCCTCTCAGA TCAGGCGTTT TGATCTGCGA ACGGGTGACC GCGTAGGCGG CCAGGTAAGA
AAGCCTAAAG ATAATGAAAG GTATTTTGCG TTATTGAGGG TAGAACAGGT TAACGGGATT
GATCCCCAGG TTGCTGCTGA AAGAATTCAT TTTGACGGTT TAACCCCCCT ATATCCCCAA
GAACGAATTA CTCTGGAAAC TTCTTCGGAA CGAAAATCTA CACGAATAAT TGATCTAATA
GCTCCCTTGG GTAAAGGTCA ACGCGGCCTG ATTGTAGCTC CTCCTAAAGC AGGTAAAACT
ATTCTGCTGA AAAGTATAGC TAATAGCATA ACCACCAACC ATCCCGAGAT CGTTCTCATA
ATCTTGCTTA TTGATGAACG ACCGGAGGAA GTTACGGATA TAGAAAGATC TGTTAATGCG
GAAGTCGTCA GCTCTACTTT TGATGAGCCT CCGGAAAATC ATGTAAAAGT GGCTGATATG
GTTTTAGAGC GGGCTAAACG CTTGGTTGAG CATAAAAAAG ATGTGGTAAT TTTGATGGAC
AGTATTACTC GCCTGGCCCG TGCTCATAAC TTGATTGTGC CTCCTAGCGG CAGAACCCTT
TCAGGGGGTG TTGATCCGGC AGCTTTGCAT AAACCTAAAA GGTTTTTTGG TGCAGCAAGA
AAGCTGGAGG AGGGTGGCAG CCTGACTATT CTGGCTACTG CATTGGTGGA AACAGGAAGT
AGAATGGACG ATGTTATCTT TGAAGAGTTT AAAGGAACCG GCAATATGGA GCTGGTATTA
GATCGCCGAT TGGCTGAGAA GAGAATTTTC CCTGCCATAG ATGTTCAACG TTCCGGAACC
AGAAAAGAAG AACTTTTGTT GACAAAAGAT GAACTAGAGT TAACGTGGTT CTTCCGCAAG
AATATTCACG GGTTGAATCC CTGGGACGCG ATGGAAATGA TGATGGAAAA AATAAGAGGC
ACCCAGAACA ATGCGGAGTT GTTGCAAAAC TTCAAGCAGT CCAGGAAAGC CACCCCCGGC
CGATTAAATA ACCCCGAAAT CCCCACCAAT AATACCAGAA AGATATTATA A
 
Protein sequence
MNQSDLEAKT MVELYKIAKE LEIVGYSKLR KKELIFEIIK IKTEKTGLLF ASGVLEILPD 
GYGFLRPFKY HPSYDDIYVS ASQIRRFDLR TGDRVGGQVR KPKDNERYFA LLRVEQVNGI
DPQVAAERIH FDGLTPLYPQ ERITLETSSE RKSTRIIDLI APLGKGQRGL IVAPPKAGKT
ILLKSIANSI TTNHPEIVLI ILLIDERPEE VTDIERSVNA EVVSSTFDEP PENHVKVADM
VLERAKRLVE HKKDVVILMD SITRLARAHN LIVPPSGRTL SGGVDPAALH KPKRFFGAAR
KLEEGGSLTI LATALVETGS RMDDVIFEEF KGTGNMELVL DRRLAEKRIF PAIDVQRSGT
RKEELLLTKD ELELTWFFRK NIHGLNPWDA MEMMMEKIRG TQNNAELLQN FKQSRKATPG
RLNNPEIPTN NTRKIL