Gene Dtox_0002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDtox_0002 
Symbol 
ID8426921 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum acetoxidans DSM 771 
KingdomBacteria 
Replicon accessionNC_013216 
Strand
Start bp1591 
End bp2694 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content31% 
IMG OID645032396 
ProductDNA polymerase III, beta subunit 
Protein accessionYP_003189590 
Protein GI258513368 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.226085 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATTCA TCAGTACAAA AGACAATCTT CTTTATGCAA TTCAAACTGT ACAAAAAGCT 
GTTTCCCCAA AAAGCCTTTT GCCAATTTTA TCGGGAATTT TATTCAAAGC CTATGACAAT
ACATTAATTG TAAGGGCAAC AGATCTTGAA CTAGGTATAG AATGCTTTTT GCCTGTAAAA
GTTATAGAAA CAGGAGAAAT TGTTTTACCG TCGAAATATA TAATTGATAT TATAAGAAGA
CTTCCTGATA CTGTTATTGA GTTTGAAAGC AACGATTATT TGAATTCAAT TACTATAAAA
TATAAAAATT CACAGGCTAA TATACACGGC TTTGCGGCAG ATGAATTCCC GATGCTTCCA
CCTTTAAACG ACGGTTTTAC TTTTTTAATT TCCACTAGCA TTTTTAAAAA AATGTTAAGA
CAAACTATTT TTGCCACAGG TACAGATGAA AACAGACCTG TTTTTACCGG CATTCATTTT
CAAATATTAG AACAGGAATT TAAAATGGTA GCAACTGATA CGCACAGATT AGCTATGATT
ACAGAACATT TGCCCCTAAT TAAGCAGGAA TTGCCCGGTA TTATAGTACC AGGCAAAACG
CTGAGTGAAC TATTAAAAAT ATTAAACTCA ACACAAGATG AAGAAATAAA GATTACCGTT
ACTGAAAATC AAATTTTCTT TTTGCTTAAT GAAATAAATA TAATATCCAG GCTAATTAAA
GGACAGTATC CAAATTATCA TCATGTTATA CCCAAAGACA TAATTGCTAA AATTAAAATT
AAGTTAAGTG ATTTTATACA ATCTGTAGAA AGGGCTTCTC TTTTAAGCAG TTCAATATCT
CAACATATAA GAATAGATTG CGAGAATAGT GATTTTATAG TCATTTCATC GAATAATGAA
GCAGGTCACA TATATGAAGA AATACCGGTC TTTTTTGAAG GAGAAGCTTT ACAAATTTAT
TTTAACAGTA AGTATTTGAT GGATGCGCTT AAAGCTGTAG ATTCAGAAGA AATTTATCTC
GAATTATCGG GACCTATTAA TCCTTGTTTA TTGAGAACAG AAGACAGAAA CTACTTATCA
ATTTTATTGC CGGTAAGACC TTAA
 
Protein sequence
MKFISTKDNL LYAIQTVQKA VSPKSLLPIL SGILFKAYDN TLIVRATDLE LGIECFLPVK 
VIETGEIVLP SKYIIDIIRR LPDTVIEFES NDYLNSITIK YKNSQANIHG FAADEFPMLP
PLNDGFTFLI STSIFKKMLR QTIFATGTDE NRPVFTGIHF QILEQEFKMV ATDTHRLAMI
TEHLPLIKQE LPGIIVPGKT LSELLKILNS TQDEEIKITV TENQIFFLLN EINIISRLIK
GQYPNYHHVI PKDIIAKIKI KLSDFIQSVE RASLLSSSIS QHIRIDCENS DFIVISSNNE
AGHIYEEIPV FFEGEALQIY FNSKYLMDAL KAVDSEEIYL ELSGPINPCL LRTEDRNYLS
ILLPVRP