| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aaci_2684 |
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| Symbol | rpsD |
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| ID | 8426225 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013205 |
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| Strand | - |
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| Start bp | 2763481 |
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| End bp | 2764107 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 645028811 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_003186077 |
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| Protein GI | 258512643 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000106865 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCAAGGT ATACAGGGCC CGTGTGCCGT CTGTGCCGCC GCGAAGGCAT CAAGCTCTAC
CTGAAGGGTG AGCGGTGCTT CAGCGAGAAG TGCGCTGTCG ACAAGCGGCC GTACGCACCG
GGACAACATG GACAAGGTCG CAAGCGCACC ACCGAATACG GCATGCAGCT GCGGGAGAAG
CAAAAGGCGC GCCGCTACTA CGGGGTGCTG GAGAACCAGT TTGAGCGTTA TTACGAGGAG
GCCGCTCGCC GTCGCGGGGT GACGGGCGAG ACGTTGCTCC AGCTGCTCGA GAGCCGCCTG
GACAATGTCG TGTACCGGCT TGGCTTTGCG GCGTCCCGCG CGGAGGCTCG CCAGTTGGTG
CGCCATGGCC ACATTCAGGT GAACGGCCGG CGTGTGGACA TTCCGTCGTT CCTGGTGAAG
GAGGGCGACG TGGTGTCGGT TCGGGAGAAG AGCCGCGACA ACGCCCGCCT GAAGGAGCTC
GCCGAACTGA TTCCGAGCCG CACCATCCCG GCCTGGCTGG AGCTCGACGC CGAAAATTGG
ACGGCGAAGG TGCTGCGCCG CCCTGCGCGC GACGAGATCG ACGCCCCGGT GCAGGAGCAG
CAAATTGTCG AGTTCTACTC TCGTTAA
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| Protein sequence | MARYTGPVCR LCRREGIKLY LKGERCFSEK CAVDKRPYAP GQHGQGRKRT TEYGMQLREK
QKARRYYGVL ENQFERYYEE AARRRGVTGE TLLQLLESRL DNVVYRLGFA ASRAEARQLV
RHGHIQVNGR RVDIPSFLVK EGDVVSVREK SRDNARLKEL AELIPSRTIP AWLELDAENW
TAKVLRRPAR DEIDAPVQEQ QIVEFYSR
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