Gene Aaci_0921 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAaci_0921 
SymbolispG 
ID8424414 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 
KingdomBacteria 
Replicon accessionNC_013205 
Strand+ 
Start bp1000691 
End bp1001776 
Gene Length1086 bp 
Protein Length361 aa 
Translation table11 
GC content61% 
IMG OID645027034 
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
Protein accessionYP_003184350 
Protein GI258510916 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.0285711 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTATCGTC GCTGGGAGAC GAAGCCGGTT CGCGTCGGCG ACGTCGTGAT CGGCGGGAGC 
AATCAGGTCA TTGTGCAGAG CATGACGACG ACCAAGACGG CGGACGTCAA GGCGACGGTG 
GAGCAGATTC ACCGTCTGGA GGACGCGGGC TGCCAGGTCG TGCGGGTGAC GGTCAACAAC 
CGCGAAGCTG CTGAGGCTAT CAAGGAAATC AAGCGGCAGA TCCATATTCC GCTTGTCGCA 
GATATTCACT TCGACCACCG GCTCGCGCTC GAGGCCATCA AGAACGGCGT GGACAAGGTG 
CGCATCAACC CGGGCAACAT CGGCAAGCGC GAGAAGGTCG AGGAAGTCGT CAAGGCGTGC 
AAGGAGCGCG GAATTCCCAT TCGCATCGGG GTGAACGCGG GATCGCTCGA GAAACACATC 
CTCGAGAAGT ACGGCTACCC GACGGCGGAG GGCATGCTCG AGAGCGCGGA ACATCACGTG 
AAAATCCTGG AGGACCTGGA TTTTGATGAT ATCGTCATCT CGATGAAGGC CTCCGACGTG 
CCGCTCGCGA TTGAGGCGTA TCGCCTGGCC GCGGAGCGGT TCCGATATCC GCTCCACCTC 
GGGATCACGG AGTCAGGAAC CTTGTTTGGC GGTACCATCA AGAGCGCGGC GGGCCTCGGG 
ACGCTTCTGC ACATGGGCAT TGGGAACACC ATTCGCGTAT CGCTCTCGGC GGATCCGGTC 
GAGGAAGTGA AGGTGGCGCG TGAGCTGTTG AAGGTGTTCC ACATCGTGTC AGATGCGGTG 
ACCATCGTGT CGTGTCCGAC GTGCGGACGG ATCGACATCG ATCTCATCAG CATCGTGAAC 
GAGCTCGAGG ATTACGTGCA GAATATCCGC GCGCCCATCA AGGTGTCGGT GCTGGGGTGC 
GCCGTGAATG GCCCTGGCGA GGCGCGCGAG GCGGACATCG GCATCGCGGG CGCGCGCGGC 
GAAGGGCTGC TGTTCCGCAA GGGGCAGGTC GTGCGGAAAA TTCCGGAGCA GGATCTCCTC 
ACCGAGCTGA AAAAGGAAAT CGATACGATG GCGAAGCGTT ACGCGGAGAC GGGTTCCATT 
TGGTGA
 
Protein sequence
MYRRWETKPV RVGDVVIGGS NQVIVQSMTT TKTADVKATV EQIHRLEDAG CQVVRVTVNN 
REAAEAIKEI KRQIHIPLVA DIHFDHRLAL EAIKNGVDKV RINPGNIGKR EKVEEVVKAC 
KERGIPIRIG VNAGSLEKHI LEKYGYPTAE GMLESAEHHV KILEDLDFDD IVISMKASDV 
PLAIEAYRLA AERFRYPLHL GITESGTLFG GTIKSAAGLG TLLHMGIGNT IRVSLSADPV 
EEVKVARELL KVFHIVSDAV TIVSCPTCGR IDIDLISIVN ELEDYVQNIR APIKVSVLGC 
AVNGPGEARE ADIGIAGARG EGLLFRKGQV VRKIPEQDLL TELKKEIDTM AKRYAETGSI 
W