| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aaci_0683 |
|---|
| Symbol | |
|---|
| ID | 8424175 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013205 |
|---|
| Strand | + |
|---|
| Start bp | 729827 |
|---|
| End bp | 731881 |
|---|
| Gene Length | 2055 bp |
|---|
| Protein Length | 684 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 645026802 |
|---|
| Product | DNA ligase, NAD-dependent |
|---|
| Protein accession | YP_003184119 |
|---|
| Protein GI | 258510685 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.992096 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGTCG TGGACGCCAA ATCGGCCCTG TCCCTGGAAG AAGCGCGTGC GCGCGCCAAA
GTGCTCCGGG AACAAATCGA ATATCACAAT CGAAAGTACT ACCTGGAGGA CAATCCGGAG
ATCTCCGACG CGGAGTGGGA CGCGCTGATG CGGGATCTCA TCGAGCTTGA GCGCAAGTAC
CCAGAGCTCG TCGATCCGGC CTCGCCCACG CAGCGTGTGG GCGCCCCGGC GCTCGAGGGA
TTCGCCAAGG TCGTGCACGA GGTGCCCATG CTGTCGCTCG CAAACGCGTA TTCGACGGAG
GATCTGCTCG ACTGGGATCG CCGCGTGCGA CAGGCGGTGG GCGACGACGT CCGCTACGTG
TGCGAGCTCA AGGTCGACGG CTTGGCCGTG GCGCTTCGCT ACCAGGACGG CCGGCTCGTG
CTCGGTGCAA CGCGCGGCGA CGGATCGGTC GGGGAGGACA TCACGGCCAA CATTCGCACC
ATTCGCAACG TGCCGCTTGA ACTTTCGGAA CCCGTGTCGC TCGAGGTGCG AGGCGAGGCG
TACATGCCAA AGCGCGAGTT CATGCGGCTC AACGAGCTTC GCGAGCAGCA GGGCGAGCCG
CTTTTCGCCA ATCCGCGCAA CGCGGCCGCC GGATCGCTGC GCCAGCTCGA TCCGGCCGTG
GCCGCGAGCC GGAGGCTCGG CGTGATCGTG TACCAGTTGG TGCGCGCCGA GGCGCACGGG
TGTGAGACGC ACAGCCAGGC GCTGGATTAC GTGGCCCGCC TCGGCCTGCC CGCGCATCGC
GAGCGGCACG TGTGCGCGAA CATCGAGGAC GTGATCGCGT ACATCGAGGC GTGGGCGGAC
AAGCGGCACG AACTGCCGTA CGCGACGGAC GGCATGGTGG TGAAGGTCGA CTCCCTCGCG
CTGCAGGCGC GCCTCGGCGC CACCGCAAAG AGCCCGCGCT GGGCCATTGC GTACAAATAC
GCGGCGGAGC AGGCGGAGAC CACGCTTCGC GCCATCGAGT TGAACGTCGG CCGCACGGGT
GTAGTCACAC CGACGGCTGT GTTCGATCCC GTCCAGCTCG CGGGCACCAC GGTCTCGAGG
GCGTCGCTGC ACAACGAGGA CTTGGTGCGC GAGAAGGACA TCCGCGTGGG CGACGTCATT
GTTGTGCAGA AGGCGGGGGA CATCATTCCC GAGGTCATTC GATCGCTGCC CGAGCGGCGC
ACCGAGCCGC TGCCCGAATT TCGCATGCCG GAGACGTGCC CGCAGTGCGG ATCGCGGCTC
GTGCGGCTCG ACGGCGAGGT GGCGTGGCGC TGCATCAACC CCGACTGCCC GGCTCTCCTG
CGCGAGGGGC TCATCCACTT CTGTTCGCGC GACGCGATGA ACATCGAGGG CCTCGGCGAG
CAGTGGATCA CGGTGCTTCT GGACCGCGGG TTGGTACGGA CGCACGCGGA TTTGTATCGC
CTCCGAAAGG CCGATCTCGT CCAACTGGAC CGGATGGGGG ATAAGCTCGC GGATAAACTG
TTGCACAACA TCCAGGAGAG CAAGCGGAAC TCGCTCGAGC GCCTCTTGTT TGGACTCGGC
ATCCGGCACG TGGGCGAGAA GGCGGCGAAG ACGTTGGCGG AACACTTCGT CACCATCGAC
GCGCTGATGT CCGCGAGCGA GGAGGACTTG ATGGCGGTCC CCGACATCGG CCCCAAAGTC
GCGCAGAGCA TCCGCCAGTA CTTCGATACG CCACGGGTGA GGCAGCTGAT TCAGGAGTTG
AAAGACCTGG GCGTGAACAT GACCTACCTC GGCCCGCAGA AGGTGTCGGA CGGCCCACTC
GCCGGAAAGA CGGTGGTATT GACCGGCGTG CTTCAGGCGG CGGATCGAAA GCAGGCGACG
GCGTGGATCG AGCAGATGGG TGGCAAGGTC GCCTCGAGTG TCAGCGCGAA GACGGACGTG
CTCATCGCGG GGGACAAGGC GGGATCGAAG CTCGCCAAGG CGCAGGAGAT CCTGCGGAAT
CACCCGGACG CAAAGCTCGA GATCTGGGAT GAGGCGGCGT TTCTGCGCCT GGTGGACGAG
GCGGGGTTGC GCTGA
|
|---|
| Protein sequence | MRVVDAKSAL SLEEARARAK VLREQIEYHN RKYYLEDNPE ISDAEWDALM RDLIELERKY
PELVDPASPT QRVGAPALEG FAKVVHEVPM LSLANAYSTE DLLDWDRRVR QAVGDDVRYV
CELKVDGLAV ALRYQDGRLV LGATRGDGSV GEDITANIRT IRNVPLELSE PVSLEVRGEA
YMPKREFMRL NELREQQGEP LFANPRNAAA GSLRQLDPAV AASRRLGVIV YQLVRAEAHG
CETHSQALDY VARLGLPAHR ERHVCANIED VIAYIEAWAD KRHELPYATD GMVVKVDSLA
LQARLGATAK SPRWAIAYKY AAEQAETTLR AIELNVGRTG VVTPTAVFDP VQLAGTTVSR
ASLHNEDLVR EKDIRVGDVI VVQKAGDIIP EVIRSLPERR TEPLPEFRMP ETCPQCGSRL
VRLDGEVAWR CINPDCPALL REGLIHFCSR DAMNIEGLGE QWITVLLDRG LVRTHADLYR
LRKADLVQLD RMGDKLADKL LHNIQESKRN SLERLLFGLG IRHVGEKAAK TLAEHFVTID
ALMSASEEDL MAVPDIGPKV AQSIRQYFDT PRVRQLIQEL KDLGVNMTYL GPQKVSDGPL
AGKTVVLTGV LQAADRKQAT AWIEQMGGKV ASSVSAKTDV LIAGDKAGSK LAKAQEILRN
HPDAKLEIWD EAAFLRLVDE AGLR
|
|---|
| |