| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Elen_1312 |
|---|
| Symbol | |
|---|
| ID | 8415607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Eggerthella lenta DSM 2243 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013204 |
|---|
| Strand | + |
|---|
| Start bp | 1576968 |
|---|
| End bp | 1579274 |
|---|
| Gene Length | 2307 bp |
|---|
| Protein Length | 768 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 645024278 |
|---|
| Product | THUMP domain protein |
|---|
| Protein accession | YP_003181670 |
|---|
| Protein GI | 257791064 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1092] Predicted SAM-dependent methyltransferases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.530559 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0438625 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAACG AAAACCTCGA ACTGTTCGCT AGCTGCCTGT CCGGTTTGGA GGCGCCGCTC
GCCGAAGAGC TGAAGCGTCT GGGCATCAAG CGCGTGCGCC CCCTCGGCGG GGGCGTCGCC
TTTTTCTGCG ACGTGCGCCA TGCGTTGTCG GCGTGCCTGT GGTCGCGGCT GGCTTCGCGC
ATCCTCGTGG TGGTGGGGCG CGTGAACGCA GGCGATGCGA ACCTGCTGTA CGAGGGCGTG
CGGCGCATCG CCTGGGAGGG CGTCATCGTT CCGGGCGCGA GCATGTCCGT GCAGGCGCAC
GGCATGAACG ACGAGCTGCG CAACACCCGG TTCACGGCGC TCAAGGTGAA GGATGCCGTA
TGCGACCGTT TGCGTGAGAT GCGCGGCGAA CGTCCCGACG TCGACGCCGA TCATGCCGAC
GTTTCGGTGG ATGTGCGCGT GCGGGAGGGG CGCGCCACGA TCTCGCTCGA CCTGTCGGGC
GAATCGTTGT ACCACCGTTC CTATCTCACG CCCGACGACG GTCCTGACGC CCCGCTGTCG
TGCGCGCTCG CGGCCGGACT TCTGGCGCTG GCAGGTTGGC GCACCCGCGG AAGCCGCGGC
GAGGCACTGG TCGATCCGGC GTGCGGCGAC GGCTTCCTGG TGGTGGAGGC GGCATCTGCC
GCGTGCGACC TGGCTCCGGG CCTTACGCGC GAGCGCTGGG GTTTCTTCGG CTGGGTGCCT
TCGGATCCTG ACGTCTGGAA CGAGCTCATC GACGAGGCGG ACGAGCGGTT CGAACGCGGC
CTCGCGTCGG CCACGGCGCC GGGCGCGCTC GACGGCCCCG CGTCGGCACC GCCCGATCCG
GCGCATGTGC GCTTCGCGGG CGCGTCCACG TCGTCTCCGG CCATAGCGCG GGCGCGCGTT
CATGCCAAGC GCGCGGGCTT GCGCCAGGCC GTCAGCATCG AGCTTGCGGA CGCGCAGAGC
GTCGATGAGC TGGTGTCGCG CGTGTGCGCC GCTGCCGGCA GGGAGCGCGG CGGAGAGGCG
GCCTCGTGCA CGGTCGCCAG CGTGCTGCCC ACGGGCGAGC GGGCCCAGTC CGACGCGCGC
TCGCAGGCTG ACGCGGCCGC GTTCGTGCGC GCGGCTTCGG TCGCTCCGGC GGGCTCGACG
TTCGCCGTGG CCGGCGGCGA GATTGTGGAG GCGCGCTTTG GCGTCGCGCC CGCGGTGCGC
GCCGTGCTCG GCCGCGACCG CGTGGAGACC GAGGCGCTCG TGTTCGACAA GCCTCCCATG
GAGGCCGTGA AGGTGGTCGT GCCCGATCCC GCGGGCGGCG CCGAGCATGT GGTGGAGGTG
CTGGAGCCGA CGTCCGAGCA GTTCGCCGCA CGGCTGCGCA AAACGGCCAA GGAGCGCCGC
AAGTGGGCGC GCCGTGAAGG CGTGTCGTGC TACCGCGTGT ACGATGCCGA CCTGCCCGAC
TACGCCGTGG CCATCGACGT GTATCCGGGC GCGGGCGATG CCGAGGGCAA CCTGTACCTG
CACATCGCCG AGTACGCGGC GCCCTCGACC ATCGATCCCG GCAAGGCGCA GCGCCGCTAC
GACGACGTGC TGGCGCTCGC GCCCGTGGTG CTGGGCGTGC GCCCCGACCA CGTGTTCTCG
AAGGTGCGCC GCCGCGACAA GGGCGGCAGC CAGTATCGCG ACTCGGGCCG GCGCTCGTAC
GTCACCCAGG TGCGCGAGGA CGGCTATCTG TTCGAGGTCG ATCTGGCCGG TTACCTGGAT
ACAGGCCTGT TCCTCGACCA TCGTCTCACG CGCGAGCTGG TGGGGAAGAA GGCCGAGGGG
AAGCGTTTCC TCAACCTGTT CGCCTACACG GGTTCGGCGA GCGTGCATGC AGCCGGTGGC
GGCGCCAAGA GCACTGCGAC GGTGGACTTG TCGCAGACCT ACCTCGACTG GGCCGCGCGC
AATATGGCAG CCAACGGCTT CGAGGGGGAG CAGCATACCT TCGAACGCGG CGATACGATG
GCGTGGGTCA CCGAAGCGCG CCGCACCGGC CGCCGCTTCG ACCTCGTGTT CGTCGATCCG
CCCACGTTCT CCAACTCCAA GGCCATGGGC AAGCGCACGT GGGACGTGCA GCGCGACCAT
GTGGAGCTGC TCATCGGCGT GTCGCGCCTG CTGTCGGAAG AGGGCGAGGC CGTGTTCTCG
TGCAACCTCC GTTCGTTCAA GCCCGACGAG GAGGCGCTGG CCAAGTACGG CGTCACGCTC
GAGGACATCA CGGCGCAGAC CATTCCCCAC GACTTCGAAC GCAACCCCCG TATCCATAAA
TGCTACCTGG TTAAAAGAAC CCAGTAA
|
|---|
| Protein sequence | MDNENLELFA SCLSGLEAPL AEELKRLGIK RVRPLGGGVA FFCDVRHALS ACLWSRLASR
ILVVVGRVNA GDANLLYEGV RRIAWEGVIV PGASMSVQAH GMNDELRNTR FTALKVKDAV
CDRLREMRGE RPDVDADHAD VSVDVRVREG RATISLDLSG ESLYHRSYLT PDDGPDAPLS
CALAAGLLAL AGWRTRGSRG EALVDPACGD GFLVVEAASA ACDLAPGLTR ERWGFFGWVP
SDPDVWNELI DEADERFERG LASATAPGAL DGPASAPPDP AHVRFAGAST SSPAIARARV
HAKRAGLRQA VSIELADAQS VDELVSRVCA AAGRERGGEA ASCTVASVLP TGERAQSDAR
SQADAAAFVR AASVAPAGST FAVAGGEIVE ARFGVAPAVR AVLGRDRVET EALVFDKPPM
EAVKVVVPDP AGGAEHVVEV LEPTSEQFAA RLRKTAKERR KWARREGVSC YRVYDADLPD
YAVAIDVYPG AGDAEGNLYL HIAEYAAPST IDPGKAQRRY DDVLALAPVV LGVRPDHVFS
KVRRRDKGGS QYRDSGRRSY VTQVREDGYL FEVDLAGYLD TGLFLDHRLT RELVGKKAEG
KRFLNLFAYT GSASVHAAGG GAKSTATVDL SQTYLDWAAR NMAANGFEGE QHTFERGDTM
AWVTEARRTG RRFDLVFVDP PTFSNSKAMG KRTWDVQRDH VELLIGVSRL LSEEGEAVFS
CNLRSFKPDE EALAKYGVTL EDITAQTIPH DFERNPRIHK CYLVKRTQ
|
|---|
| |