| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Elen_0108 |
|---|
| Symbol | |
|---|
| ID | 8414391 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Eggerthella lenta DSM 2243 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013204 |
|---|
| Strand | + |
|---|
| Start bp | 142998 |
|---|
| End bp | 144479 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 645023087 |
|---|
| Product | transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_003180491 |
|---|
| Protein GI | 257789885 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.44109 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGAGA AGGCGCAACA AGGGTTCGTC GATCGATGGA AAGCCGTGCT GCTTCGGGTG
GCGGCTATTC CCTTCGTGTT TTTCGGCGTG GGGTTCTACC GCGCTTGGCT TGCAACGTTC
TTTCGCTACG ATGCGTTTCC AACCATATCG GTGTTCGATT ACTTTTTGTT CGAAGGGGCG
ATCGGTATCG TCTCCTTGGC GTTGGCCTTC GCGGCGCGCC GTGTGACGCC GCTATGGGCG
AACCGCAAAG CGGTGCTGGC CACGGGCGCG TGCATGGTGG GCGGATCGGC CCTCATCGTG
TTGGCATGCT TCGCGGTGCC GTCCCCGGCG TTGAAGGTTG CGGGGCTGCT TGCGGCGGGC
GGTGGCCTGG GGTCGCTCAT CCTCATGTGG GCCGAGTTCT ATGGCTCGCT CAACCCCATG
CGGGTGGCGC TGTACCACGC CATGGCCATC TTCGTGGGCG AAGTGGTGAA GTGGCTGTTC
ATGGGCATGT CGGTGCCGTA TCTCGCGTTC TTCTCCATCG TGTTGCCCAT CGTGTGCCTG
GCGTGCGTGC GTTCGAGCAT GACGCGTCTG CCGGAGCGTG ATCTGCCTCC TGCCATGAAA
GAAGGCGACC CGAAGACCAT CCCGTGGAAG CCTATCCTGC TGATGGCGGT ATGCACGTTC
GCGGGCGGCT TCGGGGCCCT GCCGACGCAG CTGCTGGTGC CGGGCAACGT GCTGGGCGCG
ATGTTCGTCA CGGCGCTCGT GTTCTTCGGC GTGCTGTCTG CATCGCGCTG GTTCAACTTC
GACACCATCT ACCAGCTGGC TTTTCCGCTG TTCATCGTCG GATTCCTGTT CGTTATGCCC
ACCTTCGGGT CGAACGCGCA AATCATGGCG CTGTGCTACG ATGCGGGCTA CACCATGCTG
TCCATGTACA TCATGATCGT CATGAGCAAC ATCACGTACC GGTTCGGCGT GAACGCGGTG
TGGATCAACG GCATCGAGCG CGGCATCCGC TACGTGGTCG AGCTGGTAGG GTGGCTCGCG
TTCGCCGGTG CGTCGGCGCA TTTGGGAGAA GAAGCCACGT CTATCCTGTA CGGCGGCGTG
GCGGTTGCCG TGGTGCTGAC GTTCGTCGTG ATCTTCTTCA CCGAGCGCGG GCTGTCGGCG
AAATGGGGCG TGGTGCTGAA GGACGACCCG ATGGGCAGCG CATCGGCTGA GGGGCGGATG
GCCATTCGCG TGTCCGACCT TTCGCGCGCG TACAATCTCA GCCCGCGGGA GGAAGAGGTG
CTGCAGCTTA TCGCCCAGGG TGACACGGTG GCCGAGATCG AAGAGGTTCT GTACGTGTCG
CAGGGCACGG TGAAGGCGCA CATCAACCAT ATTTACCGCA AGTTCAACAT CCACAGCAAA
AGCGAGCTGT TCGAACTGCT CAACGATGTG GAGAAGCCTG TGCGCAAGGG TCGCCGGTCT
TCTTCGTCCG CTTGGGAGGA CGAAGAACGG CAAGCAGGAT AG
|
|---|
| Protein sequence | MTEKAQQGFV DRWKAVLLRV AAIPFVFFGV GFYRAWLATF FRYDAFPTIS VFDYFLFEGA
IGIVSLALAF AARRVTPLWA NRKAVLATGA CMVGGSALIV LACFAVPSPA LKVAGLLAAG
GGLGSLILMW AEFYGSLNPM RVALYHAMAI FVGEVVKWLF MGMSVPYLAF FSIVLPIVCL
ACVRSSMTRL PERDLPPAMK EGDPKTIPWK PILLMAVCTF AGGFGALPTQ LLVPGNVLGA
MFVTALVFFG VLSASRWFNF DTIYQLAFPL FIVGFLFVMP TFGSNAQIMA LCYDAGYTML
SMYIMIVMSN ITYRFGVNAV WINGIERGIR YVVELVGWLA FAGASAHLGE EATSILYGGV
AVAVVLTFVV IFFTERGLSA KWGVVLKDDP MGSASAEGRM AIRVSDLSRA YNLSPREEEV
LQLIAQGDTV AEIEEVLYVS QGTVKAHINH IYRKFNIHSK SELFELLNDV EKPVRKGRRS
SSSAWEDEER QAG
|
|---|
| |