Gene Apar_1347 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_1347 
Symbol 
ID8414236 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp1518313 
End bp1519209 
Gene Length897 bp 
Protein Length298 aa 
Translation table11 
GC content45% 
IMG OID645022948 
Productphosphoribosylaminoimidazole-succinocarboxamide synthase 
Protein accessionYP_003180362 
Protein GI257785145 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0152] Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 
TIGRFAM ID[TIGR00081] phosphoribosylaminoimidazole-succinocarboxamide synthase 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.287874 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCTGGAG CTGAGCTTCG TCCCGATTCG CACGGTAAGG TTCGCGATAT TTACGATTGC 
GGCGACAAAC TTTTAATGGT TGCGAGCGAT CGCATTAGTG CTTTTGACTT TATTCTCCCT
GATGAGATTC CTTTTAAGGG AGAAATTTTG ACACGTATTA GCGCATTTTG GTTTAATCGC
TTTAAGGATC TTTTACCTAA CCATATGATT TCTGTTTTGC CAGACCAGAC TCCTGAGCAG
TTTGCAGATT ACACTGAGTA TCTTGCAGGC CGCGCTATGT TGGTTAAAAA GGCAAAAACT
GTGCCAATTG AGTGCATCGT ACGAGGTTAC CTTACTGGTT CTGGTAAGAA GACTTACGAC
CAGGACGGTA CTGTCTGTGG CATTAAGTTG CCTGATGGTC TAAGCGAGGC CTCAAAGCTT
CCTGAGCCAA TCTTTACACC TTCTACTAAG GCTGAGCTTG GTGATCATGA CGAGAATATC
TCGTTTGAGC GTTGCTGTGA GATTGTTGGT GAGGATGTTG CAACTCAGTT GAAGGAAGCC
TCGCTTGCAA TTTATAAGGC TGCTGCAGAA TATGCCGCAA CTCGTGGAAT TATTATTGCG
GATACCAAAT TTGAGTTTGG TTTTATCGAC GGAAAACTTA CACTTATTGA TGAGTGCCTT
ACACCCGATT CAAGCCGTTT TTGGCCTGCT GAGGGATATA TTGAGGGACA TGTTCAGCCA
AGTTATGATA AACAGTATGT ACGGGATTGG CTGAAAGCCT ACTGGGACAT GCAAGGAGAG
CCACCTCATC TGCCAGAAGA GGTAATTGAG GGCACGTCCG AACGTTATCG TACGGCATTC
CAGATTATTA CGGGAACTGA GTTTGTACCA CTGAAGGAGA CCAATGTCAC TGCGTGA
 
Protein sequence
MAGAELRPDS HGKVRDIYDC GDKLLMVASD RISAFDFILP DEIPFKGEIL TRISAFWFNR 
FKDLLPNHMI SVLPDQTPEQ FADYTEYLAG RAMLVKKAKT VPIECIVRGY LTGSGKKTYD
QDGTVCGIKL PDGLSEASKL PEPIFTPSTK AELGDHDENI SFERCCEIVG EDVATQLKEA
SLAIYKAAAE YAATRGIIIA DTKFEFGFID GKLTLIDECL TPDSSRFWPA EGYIEGHVQP
SYDKQYVRDW LKAYWDMQGE PPHLPEEVIE GTSERYRTAF QIITGTEFVP LKETNVTA