Gene Apar_1327 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_1327 
Symbol 
ID8414212 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp1490087 
End bp1491499 
Gene Length1413 bp 
Protein Length470 aa 
Translation table11 
GC content46% 
IMG OID645022924 
ProductMur ligase middle domain protein 
Protein accessionYP_003180342 
Protein GI257785125 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0769] UDP-N-acetylmuramyl tripeptide synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.99076e-06 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000242236 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
GTGGCACAAA AAAAGAGCAG ATTATTTCCT GTAGCTTTTC TCGCTGCTAA AGCAACACTT 
GCAGCACTTA AGTTGACTAA TCACGAAGGT GGAACTCTAC CAGGATTTAT TGCGGAGGCC
ATTGACCCTG CATTTTTAGG GGATATCGCT AAGCCAGAAC AGGTTGTCTT TATCACAGGT
ACTAATGGCA AGACAACCAC TAATAACTTG CTCAACGATC TTCTCGCTGA TAACGGTTAT
CAGACTGTTA CTAATCGCGT TGGCGGTAAT ATTTCTAGTG GTTTTGCAAG CTCATTTGCA
AAGAACGCCA CATGGAAGGG CGCTTCAAAG ACTAAGCTTG CAGTTATGGA GTTTGATGAG
CTCTCTGGAC CTCGCATTTT TCCTTATTTG CAGCCTGATA TTTTGTCCGT TACTAATTTG
TTCCGCGATA CGTTTTCTCG CAGTGCAACG CCAGACTATG TGTTTGACGT TATGGATAAG
GGTATCCCTG CTTCAACTCA TCTGATTTTG AACGCAGATG ACATGATTAG CTGCAGACTT
GCCCCTCAAT GTACTCATCG TACGTATTAC TCAATTGCAA GGTTGGCTGA TGATACTGCG
GATCCTGTAG GCATTGTTTC AGACCTTACC GCATGTCCAA AATGTGGCGG CAAGCTCAAG
TGGGATTACG CTCATCTCAG ACATCTTGGC CACGCAACTT GCGAGGAATG CGGGTATACC
AATCCAACTC CTGATTATGA GGTTATCTCA GTAGAGCCAG AGACTGGCAA GTTTGTGGTC
AAAGAACACT GCCACGAGGG TGCACCAACG TACGAATATA AGCTCAACAG CTACTCTATC
GTTAACCTCT ACAACCTGTT TGTAGCTATT GTTACCGCGC GTGAGATGGG TCTTGCGCCT
GCAACTATCG CCGCGTCTTT GCAGCGCGTT AACATTGCTT CTTCCAGGTA TAACGAGATT
GATTACAACG GTCGTCGCCT TATTAGCATG GCTTCTAAGG GCGAGAATGA CACGGCAACC
TCAGTTACTA TTGATATCCT GCGCAAACAA CCAGGCGATA AGGCAATTAT CATCATGATT
GCTGATGCAT ATATGGCAAA AGCTAAGGAC CAGACAGAGT ACATTGGCTG GTACTACCAG
ACCGACTTTG AGTTCCTGCA AGATCCAAGT GTTAAGCAGG TCATTATTTA CGGTGATACA
TCACTTGATC TGCAGCTCAG ACTCAGACTT GCGGGCGTTG ATCCTGCTAA GACCTTTGTA
GCAAACTCTC CTGAAGAGAC TGCTGACCTG GTTGATCTCA ATGCTTGCCA ACACGTTTTC
TATGCACATG GCCTCTACAA CGGTGGTATT GCTGATATCA GCAGAAACCG TATCATTGAG
CGCTTAAAAC AGATGGAGGC CTCCAATGAG TAA
 
Protein sequence
MAQKKSRLFP VAFLAAKATL AALKLTNHEG GTLPGFIAEA IDPAFLGDIA KPEQVVFITG 
TNGKTTTNNL LNDLLADNGY QTVTNRVGGN ISSGFASSFA KNATWKGASK TKLAVMEFDE
LSGPRIFPYL QPDILSVTNL FRDTFSRSAT PDYVFDVMDK GIPASTHLIL NADDMISCRL
APQCTHRTYY SIARLADDTA DPVGIVSDLT ACPKCGGKLK WDYAHLRHLG HATCEECGYT
NPTPDYEVIS VEPETGKFVV KEHCHEGAPT YEYKLNSYSI VNLYNLFVAI VTAREMGLAP
ATIAASLQRV NIASSRYNEI DYNGRRLISM ASKGENDTAT SVTIDILRKQ PGDKAIIIMI
ADAYMAKAKD QTEYIGWYYQ TDFEFLQDPS VKQVIIYGDT SLDLQLRLRL AGVDPAKTFV
ANSPEETADL VDLNACQHVF YAHGLYNGGI ADISRNRIIE RLKQMEASNE