Gene Apar_1239 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_1239 
Symbol 
ID8414118 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp1390386 
End bp1391093 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content50% 
IMG OID645022831 
Producttranscriptional regulator, XRE family 
Protein accessionYP_003180255 
Protein GI257785038 
COG category[K] Transcription 
COG ID[COG1396] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTACTT CATCTGAGAC CCTTGGTCGT CGTATTGCAC GTCTTCGTTT AGCTAAAACT 
GCAACGCAGG AGCGTCTGGC AAAAGAGTTG AACGTGAGTC CGCAGGCGGT GAGCAAGTGG
GAGAGCGACA TTAACTATCC GGATATTTCG CTGCTGCCAG ATCTTGCACG CTTTCTTGGA
GTGTCCGTTG ACGAACTTTT GAGCGGCGCA AGTGCCTTCG CTCAGGAGAG TGTCGCTGCC
CAAGAGGGTA CTGCCGAGGT TGTTTCTGTT GCAGCCGACG AGCCCGCGGA GATCGTAGAA
GAGCCCACAG AGCAGGACAA CCAGGGCATT GCTACTCAGT CTTCAGGTTT CAGCTTTGGC
AAGCTTTTTG GTAAGAGCAT GGTCAAAGTC GAGAAAAACG ACGAGGCTGA CGGTAGCAAG
AAGAAGGACG TTCGCTTAGG CAATGGATCT GCAAAGCACG GGTTGCACGT GTATGTTGTT
TCCAACAACG GCGATGTTGT TGATATGTGC GTACCTTTGG GTCTGGCAAA GTTTGTGCTG
AATTCTGGAA TTCATATCAG TGGCAGCTAT CTTAATCAGG AGACTCAGAA GCAGCTCTCT
AACATTAATT TTGATGCGCT TATGGAAGCT GCAAAGACTG GCGAGAGTGG CACACTTGTG
GATATTACAT CCGCAGACGG TAACGTTGTA AAGATCTGGT TTGACTAA
 
Protein sequence
MTTSSETLGR RIARLRLAKT ATQERLAKEL NVSPQAVSKW ESDINYPDIS LLPDLARFLG 
VSVDELLSGA SAFAQESVAA QEGTAEVVSV AADEPAEIVE EPTEQDNQGI ATQSSGFSFG
KLFGKSMVKV EKNDEADGSK KKDVRLGNGS AKHGLHVYVV SNNGDVVDMC VPLGLAKFVL
NSGIHISGSY LNQETQKQLS NINFDALMEA AKTGESGTLV DITSADGNVV KIWFD