Gene Apar_1232 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_1232 
Symbol 
ID8414111 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp1383977 
End bp1385338 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content47% 
IMG OID645022825 
Productbeta-lactamase domain protein 
Protein accessionYP_003180249 
Protein GI257785032 
COG category[R] General function prediction only 
COG ID[COG2333] Predicted hydrolase (metallo-beta-lactamase superfamily) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value6.15653e-06 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCAACT CAACGCAATT TGACAGCAAA ACTGAATCGC CCAGCACAAC CTCTGGCGAG 
CAATCTAACT ACTTTTTTGC ACTCATTCTT TCCTTGATAT TTGGCATTTT TGGCGTTCCA
CAGTTGTATC TCAAGGGTTG GAAATCAGGG CTTACAAGAC TTGTTGTAAA TACGACGCTG
ATTGTTGGCA CAATCGTCCT AGCTCAAATA TTTGCCTTAC CAGCATTGCT TTCTTATCTT
CTACCAGCAA TTCTTTCGTA CCCGGTTATC GAGAGCGCTC TAAACCTCAT TTACGAAGAT
GCCAATGCTT CCAAAAAACT CATAAAAGGC AAGCTCAAGC TCCACAAGCG GTACGCCGGA
AAACAAAAAG CCGGAATTGC ATTAGCCTCA CTGAGTATAG CGCTCTACTT TAGTGCTGCA
CTGACGCAGC CGCTTCCAAC TACCGTCTCT ACCGCGGGCG TATCAGGTCA ACAAGCCACA
GTTCAAGCGA CCAACGCACC CTCGCAGACA GACTCCGACA CGTCATCCAC AACCTCGCTG
GCAAACACAA ACGTAACCAT CAAGTTTATC GACGTTGGCC AAGGAGAAGC AATTCTCATT
GCACTTCCCG AAAAAACCAT GCTTATCGAT GCCGGTCCTA CAGGTTCAGG TCCAAAAATT
TCTCAGGTGC TCCATGAACT TGGTCGAGAG AAGATTGATT ACCTGGTAGC TACCCATCCT
GACGAAGATC ACATTGGTGG CATGGCGGAC GTCATTTCCA GCACCCAAAT CGGAACCATT
TACGCACCAA ATAAGACAAA CAACACGGCA ACATACAGAA AGTTTCTAAC CGCTATTCAG
AACAATAACC TACAAATAAC CCTTGCTGAA GCAGGGACCA TCATCGACCA AACCGATGAC
TACAAGATAG AAATTCTTTG GCCAGCCAAA GACGCAAATT TTCCCGATAC CAATGACTAC
TCGATAATTA TCAAACTAAC CATTGGCAAC AAGACGTTTC TTTTCACGGG AGATGCACCT
ACAAGCGCAA TCCTTCAGAG CAATCCAGGC CACATCGACG TGCTCAAGCT CTCCCATCAC
GGCTCTAGAA CAGGTACAAA TGAGCAACTG GTCCGCAAGC TATCGCCCAC TTACGCCCTC
ATTTCTTACG CTTTGGATAA CTCCTACGGA CACCCCATGA AGTCAGTCTT AAACGCCCTC
CACAAACATT CCGTTGAGAT TTGGGGAACG GGAGCTAACG GAACTATTAC CATTACCTGC
GATGGTACAA CCATTGAAAT ATCTGGCGAG AAGAACGGCA CTGTTGTTGC TCCTACCTCA
CCAGAAAAAT CTGGCACGTC GTCGACATCG AGGACTAAGT AA
 
Protein sequence
MPNSTQFDSK TESPSTTSGE QSNYFFALIL SLIFGIFGVP QLYLKGWKSG LTRLVVNTTL 
IVGTIVLAQI FALPALLSYL LPAILSYPVI ESALNLIYED ANASKKLIKG KLKLHKRYAG
KQKAGIALAS LSIALYFSAA LTQPLPTTVS TAGVSGQQAT VQATNAPSQT DSDTSSTTSL
ANTNVTIKFI DVGQGEAILI ALPEKTMLID AGPTGSGPKI SQVLHELGRE KIDYLVATHP
DEDHIGGMAD VISSTQIGTI YAPNKTNNTA TYRKFLTAIQ NNNLQITLAE AGTIIDQTDD
YKIEILWPAK DANFPDTNDY SIIIKLTIGN KTFLFTGDAP TSAILQSNPG HIDVLKLSHH
GSRTGTNEQL VRKLSPTYAL ISYALDNSYG HPMKSVLNAL HKHSVEIWGT GANGTITITC
DGTTIEISGE KNGTVVAPTS PEKSGTSSTS RTK