| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1219 |
|---|
| Symbol | |
|---|
| ID | 8414098 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 1365893 |
|---|
| End bp | 1368364 |
|---|
| Gene Length | 2472 bp |
|---|
| Protein Length | 823 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 645022813 |
|---|
| Product | putative phosphoketolase |
|---|
| Protein accession | YP_003180237 |
|---|
| Protein GI | 257785020 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3957] Phosphoketolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.514131 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.618192 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCAGC CCGTGTACGG TACACCTTGG CAGACCCTGA ATCAGCCTGT ATCTGAGGAA
GAACTTGCCG GCGTCGATAG GTATTGGCGC GCAGCTAATT ACCTGTCTGT TGGTCAGATT
TATCTTCGCA GTAACCCTCT TATGAAGGAT GGTTTTTCTC GCGAGGATGT TAAGCACCGT
CTGGTTGGCC ACTGGGGAAC CACCCCAGGT CTAAACTTCC TGTTCGGCCA CGTCAACCGT
TTCATTCGCG ACCATAACCA GAACACCATC TTCCTCATGG GTCCTGGTCA CGGTGGACCT
GCAGGTACTG CACAGTCCCT GCTTGACGGA ACTTATCGTG AGACCTACCC ATTTATCACT
GACGATGAAG AGGGTCTCCA GAAGTTCTTC CGCCGCTTCT CTTATCCTGG CGGAATTCCT
TCCCACTATG CACCTGAGAC CCCAGGTTCC ATCCACGAGG GCGGCGAGCT GGGTTACACC
TTGTCTCACG CATACGGCGC TGTCTTGGAC AATCCATCCC TGCTTGCAGT TGCTGTTGTC
GGCGACGGTG AGGCAGAGAC CGGTCCACTT GCAACTTCTT GGCAGACCAA CAAGTTCATG
GACCCACTGA CCGATGGTAT TGTTCTTCCA ATCCTGCACC TCAACGGCTA CAAAATTGCC
AACCCAACCA TTCTTGCTCG TATTTCCGAT GGTGAACGCG ACGAGTTCTT CCGCGGCATG
GGCTATCACC CATATAATTT TGTTGCTGGC TTTGACGACG AGGATCACGC ATCCATCCAC
CGTCGTTTTG CAGCTCTGCT TGAGGCTGTC TTCAATGAGA TCTGCGCTAT CAAGACTCGC
GCAGCCGCAG GTGACGCATC GCGTCCTTAC TACCCAATGA TCATCTTCCG CACCCCTAAG
GGTTGGACTT GCCCTCCTTA TATTGATGGC AAGAAGACCG AGGGCTCTTG GCGCGCACAC
CAGGTTCCAC TGGCATCAGC TCGCGACACT GAGGCTCACT TCCAGGTTCT TCGTGATTGG
ATGAGCTCCT ACAATCCAGA GACCCTCTTC ACCGAGAAGG GCGCAATCCG TCCAGAGGTT
ACTTCCTTCA TGCCTAAGGG TGACCTCCGT CTTGGCGCTA ACCCTAACGC AAATGGTGGT
ACAATCCGTC GCAACCTCGT TCTTCCTGAT GCAAAGAAGT ACGAGATTCC AGTTGCCGAG
AAGGGCCACG GCTTTGGTGC TACTGAGGCA ACGCGCGTTC TTGGCGAGTA CACCGCTGAG
CTTATTAACA GCAACCGTTC TGAGTTCCGT ATCTTCGGAC CTGATGAGAC CGCTTCTAAC
CGTCTGCAGC CTTCCTTCCA GGTAACCGAC AAGCAGTGGT TTGGTGGCTT TAACGACGAC
TTTGAGAACG ACGAGCATAT TTCCCCAGTT GGTAACGTTA TTGAGCAGCT TTCCGAGCAC
CAGTGCGAGG GTCTGCTTGA GGGCTACACC CTAACTGGCC GCCACGGCAT TTGGTCTAGC
TACGAGTCAT TTGTCCACAT CATTGACTCA ATGATCAACC AGCACGCTAA GTGGCTTGAG
GCTACCGTCC GCCACATTCC ATGGCGCAAA CCTATTTCTG CTCTTAACCT GGTTCTTTCC
AGCCACGTTT GGCGTCAGGA CCACAACGGA TTCTCTCACC AGGATCCTGG TTTTGTTGAC
ATCATGCTTA ACAAGAGCTT CAACAACGAC CACATCACCA ACATCTACTT CCCAGCAGAC
GCTAACCTTC TGCTTGCAGT TGGCGAGAAG TGCTATACCT CCACAAACTG CATCAACGCT
ATCTTTGCTG GTAAGCAGCC TGCTCCAACG TGGGTAACCC TCGACGAGGC TCGCGAGGAG
CTTTCAGTTG GCGCTAAGGA GTGGAAGTGG GCTTCCAACG CTGAGGCTGG CGAGGAGGAC
ATTGTCCTTG CATCCTGCGG CGACGTTCCT ACTCAGGAGC TCCTTGCTGC TCTGGACATG
CTTGGTAAGC TGGGCATCAA GGCTCGCTTC GTTAACGTTG TTGACCTGCT CAAGATTCAG
AACGCTTCCG AGAACAACGA GGCTCTTTCT GACGAGGAGT TCACAAAGCT CTTCTCCGCA
GACAAGCCAG TTCTCTTCGC ATTCCACGCT TACGCTGGTT CTGTCCGTCG CCTGATTTGG
AACCGTCCAA ACCACGACAA CTTCAACGTT CACGGCTACG AGGAGCAGGG TTCCACCACA
ACTCCTTACG ACATGCTACG CTTGAACAAC ATGGACCGCT GGGCACTTGC TGCTGACGCT
CTCCGCATGA TTGACGCTCA GAAGTGGGCA GATCAGATTG ACGAGTGGGA GAAGTTCCGC
ACCGAAGCCT TTGAGTTTGC TGTCGAGAAG GGCTATGATC ACCCAGCATT TACTGATTGG
TCTTGGCCAG ACGCTTCCGA TGCTGATCAG AGCATCTCTG CAACTCAGGC AACCGCAGGC
GACAACGAGT AA
|
|---|
| Protein sequence | MAQPVYGTPW QTLNQPVSEE ELAGVDRYWR AANYLSVGQI YLRSNPLMKD GFSREDVKHR
LVGHWGTTPG LNFLFGHVNR FIRDHNQNTI FLMGPGHGGP AGTAQSLLDG TYRETYPFIT
DDEEGLQKFF RRFSYPGGIP SHYAPETPGS IHEGGELGYT LSHAYGAVLD NPSLLAVAVV
GDGEAETGPL ATSWQTNKFM DPLTDGIVLP ILHLNGYKIA NPTILARISD GERDEFFRGM
GYHPYNFVAG FDDEDHASIH RRFAALLEAV FNEICAIKTR AAAGDASRPY YPMIIFRTPK
GWTCPPYIDG KKTEGSWRAH QVPLASARDT EAHFQVLRDW MSSYNPETLF TEKGAIRPEV
TSFMPKGDLR LGANPNANGG TIRRNLVLPD AKKYEIPVAE KGHGFGATEA TRVLGEYTAE
LINSNRSEFR IFGPDETASN RLQPSFQVTD KQWFGGFNDD FENDEHISPV GNVIEQLSEH
QCEGLLEGYT LTGRHGIWSS YESFVHIIDS MINQHAKWLE ATVRHIPWRK PISALNLVLS
SHVWRQDHNG FSHQDPGFVD IMLNKSFNND HITNIYFPAD ANLLLAVGEK CYTSTNCINA
IFAGKQPAPT WVTLDEAREE LSVGAKEWKW ASNAEAGEED IVLASCGDVP TQELLAALDM
LGKLGIKARF VNVVDLLKIQ NASENNEALS DEEFTKLFSA DKPVLFAFHA YAGSVRRLIW
NRPNHDNFNV HGYEEQGSTT TPYDMLRLNN MDRWALAADA LRMIDAQKWA DQIDEWEKFR
TEAFEFAVEK GYDHPAFTDW SWPDASDADQ SISATQATAG DNE
|
|---|
| |