| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1213 |
|---|
| Symbol | |
|---|
| ID | 8414091 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 1358518 |
|---|
| End bp | 1359573 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 645022807 |
|---|
| Product | 5-methylcytosine-specific restriction enzyme subunit McrC |
|---|
| Protein accession | YP_003180232 |
|---|
| Protein GI | 257785015 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG4268] McrBC 5-methylcytosine restriction system component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.816052 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATTCGGA TACAGAACAT CTACCACATG CTCGCCTACG CGTTCCAGAC GCTGCAGGGG
CAGGGCTACC GCGACATAGC CGCCGAGGAG TTTGGAAACA CCACCGAGCT CCTCGCTGAG
ATACTGGCGC GGGGTGTGAG CTTGCAGCTA AAGCGAGGCC TCGGTCAAGA GTATATCGAC
CGCGAGGAGG CGCTCTCCTC CCCGAGGGGA AAGATAGAGC TGTCCGAGTC TCTGAAGACA
CGCTCGATCC TGCGCAGGCA GCTGGTCTGC AGCTACGACG AGTTCAGCAC GGACACGCGC
ATGAACCGCA TCCTCAAGGC GACGATTGCG CTCCTGGTCC GCTCGGACAT CGACAAGGTA
CGCAAGAAGG CGCTCAGGCG GCTGCTACCG TACTTCGTGG ACGTGGGCGA CGTAGACCTT
GAACATGAGG ACTGGCACAT GCGCTTCGAC CGGAACAATC AGGCCTACCG CATGCTCATG
AATGTGTGCT GGCTGGTCGT GAAGGGCCTC CTCCAGACGC AGGAAGACGG AAGCATCCGC
ATGATGGACC TCCTCGACGA GCAGCGCATG AGCCACCTGT ACGAGAAGTT CATCCTCGAG
TACTACAGGC GCGAGCACCC GAAACTCTCC GCAGGGGCTC CATACATCGA TTGGGCTCTC
GACGACGGCT TCGATGACAT GCTCCCCGCC ATGCACACTG ACATAATGCT CGAGCAGGGC
AGGACTGTCC TCATCATCGA CGCGAAGTAC TACAGCCGCA CAATGCAACA GCAGTTTGAC
AAGCGAAGCG TCCATTCGAG TAACTTGTAC CAGATCTTCA CCTACGTGAA GAACAAGGAA
GTGGAGCTTT CCAGTACCCT CAAAGCCCAC AGTGTATCGG GCATGCTGCT CTACGCAAAG
ACCGACGAAG AAATCCAGCC TGATGGCGTG TACCAGATGA GCGGCAACCA GATAAGCGTG
AGGACGCTCG ATCTCAACCA GCCTTTCGAG GAGATACGCT CGCAGCTCGA TGGAATTGCC
AAGGCACATT TCTCAAAGGA GGCAGCCTGT GTTTGA
|
|---|
| Protein sequence | MIRIQNIYHM LAYAFQTLQG QGYRDIAAEE FGNTTELLAE ILARGVSLQL KRGLGQEYID
REEALSSPRG KIELSESLKT RSILRRQLVC SYDEFSTDTR MNRILKATIA LLVRSDIDKV
RKKALRRLLP YFVDVGDVDL EHEDWHMRFD RNNQAYRMLM NVCWLVVKGL LQTQEDGSIR
MMDLLDEQRM SHLYEKFILE YYRREHPKLS AGAPYIDWAL DDGFDDMLPA MHTDIMLEQG
RTVLIIDAKY YSRTMQQQFD KRSVHSSNLY QIFTYVKNKE VELSSTLKAH SVSGMLLYAK
TDEEIQPDGV YQMSGNQISV RTLDLNQPFE EIRSQLDGIA KAHFSKEAAC V
|
|---|
| |