| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1205 |
|---|
| Symbol | |
|---|
| ID | 8414083 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 1351941 |
|---|
| End bp | 1353734 |
|---|
| Gene Length | 1794 bp |
|---|
| Protein Length | 597 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 645022799 |
|---|
| Product | oligoendopeptidase F |
|---|
| Protein accession | YP_003180224 |
|---|
| Protein GI | 257785007 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1164] Oligoendopeptidase F |
|---|
| TIGRFAM ID | [TIGR00181] oligoendopeptidase F |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATACG AGTCTCGTGG AGAAATTGAC AGCAAATATA AGTGGGACCT GTCTTCAATG
TTCCCAAGTG ATGAGGCATT TGAGGCTGGA CTTGAGGAGC TCAAGGCTTA CTGCCCAAAA
CTGCTTGCGT TCAAAGGAAA GATTTCCACT TCCGCTCAGG CTCTTCTGGA GTTCTTGCAG
CTTGAGGACC AGATGAACCT TCTGCTCTAC AAGATTATCA ACTACGCCGA GCGCAAGAGT
GACGAGGACA CCCGCGTTGC CAAGTATCAG GCATACGTCG CAAACGCTAC CAGCGTATAT
ACACAGGCTG GCGAGGCAAC TTCTTGGTTT GCCGCAGAGC TTCTGGCTAT TCCAGCAGAA
TCTGTCGAGA AGTTCTATGC AGAGGTTCCA GCTCTTGAGT TCTATCGTCG TAAGCTCAAC
AAGATCTTGA ACCAGCGCGA GCATACCCTC TCTGCTGAGG AAGAGGCTCT TCTGGCACGC
GCTGAAGAGC TTGCTGTTCA GCCAACCAAC ATCTTTTCCA TGTTTGATGA TGCAGACCTC
ATCTTTGACG ACGCTGTAGA CTCTGAGGGC AAGACACATA AGCTGACCAG CGGTTCATTT
GTTCCTTTGC TGATGAATGG CGACCGCGTC CTACGCGAGT CCGCATTTAA GCAGCTCTAC
AGCCGCTTTG GTGAGTTCCG CAACACCTCC GCTGCAATTC TGACTAGCCA GGTTAAGAAC
CTGCAGTTCT TCTCGTCATC TAGAAAGTAT GCAAGTTCCC TTGAGGCTGC TCTTGCAGAG
AACGAGATTC CTGTTGAGGT TTATAACAAC CTCATCGATG CCGTTCACCA GAACTTCCCA
GCTTTCTACA AGTACGTTGA CCTGCGCAAG CGCGTTATGG GCTTGGATGA GTTGCACTTC
TGGGACGTCT ACACTCCTCT TGTTGACGAC GTTGACATGA AGTTTACCTA CGAAGAGGCT
TGCGACCTCA TTGTTAAGGC GCTGGCACCT ATGGGCGAGG AGTACGTTGG CCTGGTCAAG
AAGGGTCTGG AGAGCCGTTG GGTTGACGTT TACGAAACTC CAGGTAAGCG TTCCGGCGCT
TATTCTGCAG GTGGCAAGGG TATGAACCCT GTCATGCTCC TCAACTTCCA GGGCGGCCTC
GACGATGTCT ACACCCTTAT TCACGAGATG GGTCACTCCC TGCACACGTA CTTCTCGTCC
CACAACCAGG AGATTACCTA CTCTGATTAC TCCATCTTTG TTGCAGAGGT TGCATCTACC
TGCAACGAGG CGCTGCTCTC GCACTACCTG CTTGAGCACG AGACTGATCC TGCTCGCCAT
GCGTACATCC TTAACCACTT CCTTGAGGGC TTCCGTGGCA CCATCTATCG CCAGTGCATG
TTTGCCGAGT TTGAGCGCGA CATCAACCAG ATGAACGCTG ATGGCGTGGC TCTGAACGCT
GAGGTTCTCT CCGAGCGCTA CGGCAAGCTT TGCGCAGAAT ACTTTGGACC TGGCATTGAG
CTGGACGAAG AGATCAAGCT GGAGTGGTCG CGCATCCCTC ACTTCTACTA CAACTTCTAT
GTCTACCAGT ACTGCATTGG TTTCTCGGCA GCTATTGCCC TGTCTCAACG TATCCTTTCT
AAGGGCGAGC CTGCGGTCAA AGACTACATT GGCTACCTAT CCGGCGGCTG CTCCAAGACT
CCAATTGAGC TGCTCCGCGG AGCTGGCGTT GACATGGCAA CCCCAGATCC CGTTAATGCT
GCGCTCAAGT ACTTTGGCGA GCTTGTCGAC CAGCTTGAGC AGGAGCTCAA CTAG
|
|---|
| Protein sequence | MAYESRGEID SKYKWDLSSM FPSDEAFEAG LEELKAYCPK LLAFKGKIST SAQALLEFLQ
LEDQMNLLLY KIINYAERKS DEDTRVAKYQ AYVANATSVY TQAGEATSWF AAELLAIPAE
SVEKFYAEVP ALEFYRRKLN KILNQREHTL SAEEEALLAR AEELAVQPTN IFSMFDDADL
IFDDAVDSEG KTHKLTSGSF VPLLMNGDRV LRESAFKQLY SRFGEFRNTS AAILTSQVKN
LQFFSSSRKY ASSLEAALAE NEIPVEVYNN LIDAVHQNFP AFYKYVDLRK RVMGLDELHF
WDVYTPLVDD VDMKFTYEEA CDLIVKALAP MGEEYVGLVK KGLESRWVDV YETPGKRSGA
YSAGGKGMNP VMLLNFQGGL DDVYTLIHEM GHSLHTYFSS HNQEITYSDY SIFVAEVAST
CNEALLSHYL LEHETDPARH AYILNHFLEG FRGTIYRQCM FAEFERDINQ MNADGVALNA
EVLSERYGKL CAEYFGPGIE LDEEIKLEWS RIPHFYYNFY VYQYCIGFSA AIALSQRILS
KGEPAVKDYI GYLSGGCSKT PIELLRGAGV DMATPDPVNA ALKYFGELVD QLEQELN
|
|---|
| |