| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1162 |
|---|
| Symbol | |
|---|
| ID | 8414035 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | - |
|---|
| Start bp | 1299266 |
|---|
| End bp | 1299766 |
|---|
| Gene Length | 501 bp |
|---|
| Protein Length | 166 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 645022751 |
|---|
| Product | protein tyrosine phosphatase |
|---|
| Protein accession | YP_003180181 |
|---|
| Protein GI | 257784964 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0394] Protein-tyrosine-phosphatase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000000163981 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000000530383 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAATA GCCAGCTGAA TACTAATTGC CCGGACAATA CTCACGTAAT AAAGATTCTG
TTTGTGTGTC ACGGAAATAT CTGCAGGTCA ACGATGGCAC AGTATGTCAT GCAAGATCTT
GTCGAGAAGA GCGGTCTTGT AGATTTATTC TTCATTGACT CTGCGGCAAC TTCCACAGAG
GAGATTGGTA ATCCAGTTGA CCCTCGTACA CGTTGCAAGT TGCAGCAGGA GGGAATTCAT
TGTGGTAATC ATCGTGCTCG GCAGCTGACT CGCGCAGATT ATGAGTGCTT TGATTACCTT
ATTGGCATGG ATCACAACAA TCTGCGTAAT ATGATGCGCA TACTTAAGGA TGACCCGCTT
GGAAAGGTCT CACTACTCCT CGATTGGACA GAGAAACCTC GTGACATTGC TGATCCATGG
TACTCGGGCA ATTTTGATCT GACGTATGAG GATGTCACAG AAGGATGCGA AGCATTGCTT
AAGAGAATTT CATCGAAATA A
|
|---|
| Protein sequence | MKNSQLNTNC PDNTHVIKIL FVCHGNICRS TMAQYVMQDL VEKSGLVDLF FIDSAATSTE
EIGNPVDPRT RCKLQQEGIH CGNHRARQLT RADYECFDYL IGMDHNNLRN MMRILKDDPL
GKVSLLLDWT EKPRDIADPW YSGNFDLTYE DVTEGCEALL KRISSK
|
|---|
| |