Gene Apar_1160 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_1160 
Symbol 
ID8414033 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp1297672 
End bp1298298 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content52% 
IMG OID645022749 
Productribosomal protein L4/L1e 
Protein accessionYP_003180179 
Protein GI257784962 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0088] Ribosomal protein L4 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value7.38717e-07 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value5.90673e-07 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCCAAGT ATGAGATTAA GAACGTAGAG GGAAAGAAGG TCGGTACTAC CGAGCTTTCC 
TCTGACGTCT ATGGCATTGA GCCAAACATC CCTGTTGTGC ATCAGGTTGT AGTCTGCCAG
GACGCATCCG CACGTCAGGG TACCCACTCT ACAAAGAACC GTCACGAGGT ATCCGGCGGT
GGCGTTAAGC CTTACCGTCA GAAGGGTACT GGTCGTGCTC GCCAGGGTTC TATTCGTGCT
GGTCAGTGGA CTGGTGGTGG CGTCATTTTT GGACCTACCC CTCGTTCCCA CGCACGTCGT
ATTAACAATA AGATGGTCAA GCTTGCTATG AGGTCCGTCC TCTCTGGCAA GGTTGCAGAC
TCCGAGCTTG TCCTCGTTGA CTCTCTTGAG TTTGCTCAGC CTTCCACCAA GCAGGCAAAG
GCTGCACTTC AGAACCTCGG TATTGAGGGT AAGCGCGTTA CCGTTATCGT TCCAGATGAT
GACGTCAACA CTTACCTTTC TTTCCGCAAC CTTCCTAAGG TTTCGATTTT CGGCGTTTCT
GAGGTTACTA CTCGTTTCCT GATTGACAAC GGCGCACTTG TTATGTCCGC TGATGTTGCT
AAGCAGCTTG GGGAGGTGCT CGCATAA
 
Protein sequence
MSKYEIKNVE GKKVGTTELS SDVYGIEPNI PVVHQVVVCQ DASARQGTHS TKNRHEVSGG 
GVKPYRQKGT GRARQGSIRA GQWTGGGVIF GPTPRSHARR INNKMVKLAM RSVLSGKVAD
SELVLVDSLE FAQPSTKQAK AALQNLGIEG KRVTVIVPDD DVNTYLSFRN LPKVSIFGVS
EVTTRFLIDN GALVMSADVA KQLGEVLA