Gene Apar_1146 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_1146 
Symbol 
ID8414019 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp1291067 
End bp1291603 
Gene Length537 bp 
Protein Length178 aa 
Translation table11 
GC content49% 
IMG OID645022735 
Productribosomal protein L6 
Protein accessionYP_003180165 
Protein GI257784948 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0097] Ribosomal protein L6P/L9E 
TIGRFAM ID[TIGR03654] ribosomal protein L6, bacterial type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.04709e-06 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00466337 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGTCTCGTA TTGGTAAGAA GCCTGTCCAG ATTCCTGCTG GAGTCACTGT GACAGTTGAT 
AACACCACCG TTACCGTTAA GGGTTCTAAG GGTGAGCTGA CTCGTACTTT CACTGAGCTT
GTTTCTATTG CTCATGAGGG CGAGGAGATT CTTGTTACTC GCGTTGACGA GTCCTCTGAG
TCTAATGCAC AGCAGGGTCT TGTCCGCACC CTTATCCACA ACATGGTTGT TGGTGTTTCT
GAGGGCTTCG AGAAGAAGCT CGAACTCACC GGCGTTGGTT ACCGTGTAGC ACTTAAGGGC
AAGGATCTTG ACCTTTCTCT TGGTTATTCT CACCCAGTTC TTTATGTTGC ACCTGAGGGC
ATTAGCTTTG AGGTACCTGA TAACACTCAC ATTACTGTTA AGGGTATTTC TAAGGAGAAG
GTCGGTCAGG TTGCAGCTGA GATTCGTATG AAGCGTCCAC CAGAGCCTTA CAAGGGCAAG
GGCATTCACT ACGAAGGTGA GCACATCCGC AGGAAGCTCG GTAAGGCTGC TAAGTAA
 
Protein sequence
MSRIGKKPVQ IPAGVTVTVD NTTVTVKGSK GELTRTFTEL VSIAHEGEEI LVTRVDESSE 
SNAQQGLVRT LIHNMVVGVS EGFEKKLELT GVGYRVALKG KDLDLSLGYS HPVLYVAPEG
ISFEVPDNTH ITVKGISKEK VGQVAAEIRM KRPPEPYKGK GIHYEGEHIR RKLGKAAK