Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_1122 |
Symbol | |
ID | 8413995 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | + |
Start bp | 1270913 |
End bp | 1271854 |
Gene Length | 942 bp |
Protein Length | 313 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 645022711 |
Product | protein of unknown function DUF6 transmembrane |
Protein accession | YP_003180141 |
Protein GI | 257784924 |
COG category | [E] Amino acid transport and metabolism [G] Carbohydrate transport and metabolism [R] General function prediction only |
COG ID | [COG0697] Permeases of the drug/metabolite transporter (DMT) superfamily |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGTCATCTC CAACTCATAC ACCCTCTCAT ATTCTTACAC ACAATTCCTC GCAGACACTC ATCTGGAAGG GCGCCCTTCT ATTTTGTGCC CTTGTGTGGG GAGGCTCTTT TGTAGTCATC AAAGATGCAA TTAACTTTAT CCCTACTGCC TGGTTGATGA CTTTAAGATT TGTACTTTCT GTTGTTGTGG TTGGAATCAT CTTTAGAAAA AGACTTAAAG AGAATCTTGA TATCAGACAC CTTACATTTG GTGCACTCTT AGGAATTCTA AATGGCTTTG GATTTCTTTT TCAAAACGGA GCACTTGCCT ACACTACAGC GGGTAAAACA GCCTTTATCG CTTCTATCTA TTGTGCAATG ATTCCGTTTG TCAATTGGCT CATTGCAAAA AAGAAACCCC ACATCTCCAG TATCATTGCT GCCTGTATGT GTGTTGCAGG AATTGGTCTT ATCTCACTTG GAACAGACTT CTCATTTTCC TTTGGTATCG GCGAACAAAT GGCTCTCATA TCAGCAATTA TTTTTGCATT TGTTTTTGTA CTTACTGCAG AACTTTCACA CAAACTTGAC ATCATTACAC TTACCATAGT TCAGCTTGGT GTAAGCACCC TTCCTTGTCT AGGTTGGGCT CTCTGTTGTG AAACTATGCC AAACTTTTCT CAAATTCCTT CTACTGCATG GATGGCGCTT GCATATATCA TTTTTATTGC AACCGCTCTT ACTGGCGTAC TACAAAATCG ATCACAGAAA TCTGTCTCTC CTGTTCAAGC ATCACTTATC ATCTCTTTGG ATACCATCTT TGCAGCAGTT TTTGGTGTCA TCTTCCTTGC AGAAATTATT ACTCCCACAA TTTTCCTTGG CTTCATTGTT ATCTTTGTTG CAATCTTTAT CAGTGAACTT GGCGAGAAAC CCGCAGAACC TCAAACCACC TCAGAAAGCT AA
|
Protein sequence | MSSPTHTPSH ILTHNSSQTL IWKGALLFCA LVWGGSFVVI KDAINFIPTA WLMTLRFVLS VVVVGIIFRK RLKENLDIRH LTFGALLGIL NGFGFLFQNG ALAYTTAGKT AFIASIYCAM IPFVNWLIAK KKPHISSIIA ACMCVAGIGL ISLGTDFSFS FGIGEQMALI SAIIFAFVFV LTAELSHKLD IITLTIVQLG VSTLPCLGWA LCCETMPNFS QIPSTAWMAL AYIIFIATAL TGVLQNRSQK SVSPVQASLI ISLDTIFAAV FGVIFLAEII TPTIFLGFIV IFVAIFISEL GEKPAEPQTT SES
|
| |