| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1058 |
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| Symbol | |
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| ID | 8413931 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1202256 |
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| End bp | 1203257 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 645022647 |
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| Product | periplasmic solute binding protein |
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| Protein accession | YP_003180077 |
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| Protein GI | 257784860 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0803] ABC-type metal ion transport system, periplasmic component/surface adhesin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.985578 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTGA ATCCAACCGT TTCTCGTCGT AGCGCACTTG TAGCATCCGC TTTTGGCGTG
AGTGCTATTC TTGCTGGCTG CAAGCCTGAG GCTCAAAAGC AAGAAGGAGC TTCTGATAAC
AAAGACCAGA AGAAGCTCAG TATTGTGGCA AGTTTTTATC CTATGTATGA TTTTGCTAAG
CGCATCGCTG GCGATCATGC TGAGGTAACA TGCCTAGTTC CAGCAGGTAC TGAGCCACAT
GATTGGGAGC CATCCAGCAA GGATATGAAG ACTATCCAGG AAGCAGACTT CTTGATCTAC
AACGGTGCTG GTATGGAGCA CTGGGTCAAG GACGTACTTG ATGGACTTGG TTCTGGCACA
AAACTTACAT CAGTTGAGAC CAGCAAAGAC GTCAAACTTC TTGAGCTTGA AGAGGACGAT
GATCACGATC ATGAGGAGAA GAAAGACGAC CACGATCATG ACCACGATCA CGACCACGGT
GGAACCGATC CTCACGTTTG GCTTAGCCCT TTGAACGCAA AGATTCAGAT GAAGAATATT
TGTGATGCTC TCTCCGAGAA GGATTCTGAG CACAAGACAG AGTATGCTGC CAATCTTGAT
AAGGCAAATG CTGATTTTGA TACGCTTGAT AGTGAGTTCC ATAAGGGTCT TGACCCTCTA
CCTAACAAGA CCATCGTTGT TTCTCACCAG GCATTTGGTT ATTTGTGTGA GGCTTACGGT
CTTACTCAGA TGCCAATCGA GGGTGTTGAG GCAGATGCCG AGCCAAATGC TCAGGAAATG
AAAGAGATTA CTGAGTTTGT AAAAGAGCAT AATGTAAAGG TCATTTTTAC TGAGGAATTG
GTAAGCCCTA AGGTTGCTCA GGCAATTGCT GAGGCAACTG GAGCTCGCGT TGAAGAGCTT
AACCCACTTG AGGGTTTGAC TGATGAAGAG CTTAAGGCGG GCGAGGATTA CCTGTCTGTT
ATGCGTGACA ACCTCAAAGC CCTTGAGGGT GCTCTCGCAT AG
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| Protein sequence | MNLNPTVSRR SALVASAFGV SAILAGCKPE AQKQEGASDN KDQKKLSIVA SFYPMYDFAK
RIAGDHAEVT CLVPAGTEPH DWEPSSKDMK TIQEADFLIY NGAGMEHWVK DVLDGLGSGT
KLTSVETSKD VKLLELEEDD DHDHEEKKDD HDHDHDHDHG GTDPHVWLSP LNAKIQMKNI
CDALSEKDSE HKTEYAANLD KANADFDTLD SEFHKGLDPL PNKTIVVSHQ AFGYLCEAYG
LTQMPIEGVE ADAEPNAQEM KEITEFVKEH NVKVIFTEEL VSPKVAQAIA EATGARVEEL
NPLEGLTDEE LKAGEDYLSV MRDNLKALEG ALA
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