| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1045 |
|---|
| Symbol | |
|---|
| ID | 8413918 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 1181195 |
|---|
| End bp | 1182568 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 645022634 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_003180064 |
|---|
| Protein GI | 257784847 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCATCAG AGAAATCTAA TAAAGCAACT CCACAAGAGT ATAAAAAACC CTTCTTTGCT
CACTCCGATT CCTCAACTGC AGGTGTTATT ACCTGGGGAT TTTGGTGGCG TAAGCTAATA
AATTACATTG GCTTCAATTT CTTTCTATTA GTGAATATTA CGCTTGTTTA TATTTATATG
TATAACCAGC ACCTGCCACA GGGCACTTTT TACCTGGGAT TTTTTCCCAT CGAGTCTAAT
TCTATTTCTC TTACTGGTTT CTCTTTCTTG CACGGACTCT CAAGCCTCAA ATACATTGTT
CACGGAATAA CCTTTGGTGC AAAAATATTT GATTTAGGTG CGGACTTAAC TCGTTTCTGG
CCAGCATATC TTGCTATTCT CATCTGGGAA TTTATTGACA TGCTGCATTT TTTTAGCGAT
ATGCGCCGTG TCAGAAGAGC TCTTCAACCC CTCAATACAC TTGCTCTTAA AACAGAACAA
TTGATTAATA GTGATGTACT AGCAACTAAC ACTACAGCCA CTAATGACAT CCTAGTTAAG
AAGGATAAAA TGAGGAGTCT TGAACAGGCT ATTGAAGAAG CCAATGTCAA CTCTCCAAAG
ATTCAAACAG GCGACCAAGA CCTTGCAAGT ATTGAAATTG CTTTGAATAA GCTGCTTCGC
CGTATGCAAG AAGCAAAGTT GCAACAAATG CGCTTTGTCA ACGATGCTAG TCACGAACTC
CGCACACCTA TAGCTGTTAT TCGAGGTTAT ACCGACATGC TAGATCGCTG GGGTAAAACA
GACGAAGCGG TACTTGACGA ATCCATTACT GCACTCAAAT CTGAAAGTCA GCACATGCAT
GACCTGGTTG AACAGCTCCT CTTCTTAGCA CGTGGAGACG CAGGAAGAAA TACCCTCACA
AAGATCCAGC TCAATCTTGC GCAGATAGCT TCTGAGGTCT GGGAAGAATC GGAGATGATT
GACCCTGACC ACCGCTATGC TCTGAAGTTT GATCAAAGTG CGCTGTCAGA TGACCACTAC
CAAGTACTTG CCGATACTGC CATGATTAAG CAATCTATCC GTATTATCGT GCAAAACGCT
GCAAGATATT CTGCTGCCCA AACTACCATT TCTTTTAACG TCACATATGA CGAGAAAACC
GTTCAAGTTT CAATTGAGGA CGAGGGTATG GGTATATCGG AGGCTGCTGC TGCTCATATT
TTTGAGAGGT TCTGGAGAGC TGACAACGCC CGCATTGAGA GCAACGAAGG TTCTGGACTT
GGCTTATCCA TAGCAAAATG GATTGTCGAC AACCATGATG GTTCTATTAA AGTGGTTTCA
CGCGAGGGCG TAGGCACGCG CTTTACTATC GTTCTACCAC ACAAAGTTTC ATAG
|
|---|
| Protein sequence | MSSEKSNKAT PQEYKKPFFA HSDSSTAGVI TWGFWWRKLI NYIGFNFFLL VNITLVYIYM
YNQHLPQGTF YLGFFPIESN SISLTGFSFL HGLSSLKYIV HGITFGAKIF DLGADLTRFW
PAYLAILIWE FIDMLHFFSD MRRVRRALQP LNTLALKTEQ LINSDVLATN TTATNDILVK
KDKMRSLEQA IEEANVNSPK IQTGDQDLAS IEIALNKLLR RMQEAKLQQM RFVNDASHEL
RTPIAVIRGY TDMLDRWGKT DEAVLDESIT ALKSESQHMH DLVEQLLFLA RGDAGRNTLT
KIQLNLAQIA SEVWEESEMI DPDHRYALKF DQSALSDDHY QVLADTAMIK QSIRIIVQNA
ARYSAAQTTI SFNVTYDEKT VQVSIEDEGM GISEAAAAHI FERFWRADNA RIESNEGSGL
GLSIAKWIVD NHDGSIKVVS REGVGTRFTI VLPHKVS
|
|---|
| |