| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1010 |
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| Symbol | |
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| ID | 8413882 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 1141173 |
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| End bp | 1143305 |
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| Gene Length | 2133 bp |
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| Protein Length | 710 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 645022599 |
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| Product | penicillin-binding protein, 1A family |
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| Protein accession | YP_003180030 |
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| Protein GI | 257784813 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTATTA GAACCCGTCG TGCACGTAAA CACGCAAATA CACATGCCGT AGGTTTTGGC
ATTGCTGGAT TCTTTGGCTT TATGGCTCTT TTCGCCCTCG CACTTGCTCT TTCTTTGGGT
GCAGCTGTTT CTTCATGGCT TGAAAACCTG CCTGATTACA ACTCTGCTGA TGCTTACCTA
GTAGCAGAGC CTACACGCGT CTATGATTCC AAGGGTAACG ATATTGCAGA CTTCTATCTG
CAGCAACGTC ATTCTGTTAC CTTGGATCAA ATTTCTCCTT ATGTCATTCA GGGCACCATT
GATACTGAGG ACAAACGCTT CTATTCTCAT GGTGCTATTG ACCCTTGGGG TATTGCCCGT
GCGTCTGTTG GCTCACTATT TGGTGGCGGC GAAGGCGCTT CCACCATTAC ACAGCAGGTT
GTTCGTAACA CCGTTCTTTC TAACGAACAG TTTGAAATTT CTTTGAAGCG TAAGGTTCGT
GAGGCTTACA TTTCTATCCA GATGGAGAAG AAGTTTACTA AAGACCAGAT TCTTAATATG
TACCTCAACA CCATCTACTA CGGTAATGGT GCCTACGGTA TTGAAGCTGC AAGTATCATT
TACTTTAACA AGCATGCAAA TGAACTTACA CTTGCTGAAG CAGCAACGCT TGCAGGCCTT
CCAAATGCGC CTTCTGCCTA TGATCCAACT GTCAACCCAG AGGCAGCAAA AGAAAGACGC
AATACTGTTC TAGAGCGTAT GCATCGAGAA GGTCATATTA CAGATGACCA ATACAATGAG
GCTGTTGCAG AGGACTTAGT GCTTAATCCT GGTACTCTGA CCGATAGCGT TGGTCAGTTC
CCCTACTGGA CTGACTACAT TCGCAGCTTA CTCCAAGAAG ATTTTGATAG CGATACTATC
CTTCAGGGTG GATTACGTGT ATACACCACA CTTGATCCCG ATCTACAGAA AGACGCTGAT
GAGGCTGCTA GAAGGCGTAT TGCTGAGCTT GGTAACCCTC GCTTGGGCGC TGCTCTAGTC
TCCATTGATC CTCAAACTGG CTACATTAAA GCAATGGTTG GTGGACAAGA TTACTCAAAG
AGTCAGTACA ACATTGCAAC TAGTAGTAAC CGTCAGATGG GCTCCAGCTT TAAGATGTAT
ACGCTGGTAG CTGCTCTTTC TGAAGGCATG AACCCAGAGA TTGTTCTTAA CGGCAATTCT
CCTATGCAAA TTACTCCAAC CTGGCTGGTT AGGAACGCAG GTAACTACAG CTACGGCGCA
ATTACTCTAC GTCAAGGTAC GGTTTACTCT TCTAACACAG TTTATGCACA GGTTGCTGAA
GCTATTGGTA TCGATAAAAT CCTTCAGACG TGCTATGCCA TGGGTATCCG CACACAGCTA
CAGCCATATC TATCTACCAC TCTTGGCTCT CAGGGCGTAA CTCCTATCGA GCAGTGCACG
GCATTTGCAA CACTTGCCGC AGGTGGTGTT CGTCGTGACG CTGTCGCAAT TACCCGTATC
GAAGATCGTA ACGGAAACGT TATCTATGAG CATAAGGACA ATCCTGTACA GGCAATTAGC
CCAGCTGTTG CTGCAGCTGC TACAGATGTT CTAAGCGGCG TTCTTACCTC TGGTACTGGT
CGCTATGCTT ACAACTTAAA GACCTTCAAC CAACCAGTTG CAGGTAAGAC GGGTACTTCC
GATAACTCTG AGGACCTTTG GTTCTGTGCC TATACCCCAC AGCTTGCAAC AGTTGCTTGG
TGTGGATATC CAGATAGTCG TGACCCTGTT ATTATTGGCG GCGGAGAATC CTCTACCTTC
GTTACTGCTC AGTACGTTTG GGCTTACTAC ATGAATGCTG CTTTAGCCGG TGTTTCGCGT
GCTGAGTTCC CTAAGACTAC TGAGAAGATT TCCTATAAGC CTGACAGCTA CTGGAAATTT
GTTGGTGGCT CTGCTAGTGC CAAACAAAAA GAGAGTACCA CCACCACTAC TAACAACAAT
AACAATGATG AAGAGGAAGA GGAGACCACT GACGAGGAGG AAGAGGACAA TTCAACCACT
ACTCCTACCA CTCCTACTAC TCCAGCCACG CCTGGTACCG GCGCCGGTAC TGGTGCAGGC
GCAGGAGCTG GGGCTGGAAC GGGAACTCCA TAA
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| Protein sequence | MGIRTRRARK HANTHAVGFG IAGFFGFMAL FALALALSLG AAVSSWLENL PDYNSADAYL
VAEPTRVYDS KGNDIADFYL QQRHSVTLDQ ISPYVIQGTI DTEDKRFYSH GAIDPWGIAR
ASVGSLFGGG EGASTITQQV VRNTVLSNEQ FEISLKRKVR EAYISIQMEK KFTKDQILNM
YLNTIYYGNG AYGIEAASII YFNKHANELT LAEAATLAGL PNAPSAYDPT VNPEAAKERR
NTVLERMHRE GHITDDQYNE AVAEDLVLNP GTLTDSVGQF PYWTDYIRSL LQEDFDSDTI
LQGGLRVYTT LDPDLQKDAD EAARRRIAEL GNPRLGAALV SIDPQTGYIK AMVGGQDYSK
SQYNIATSSN RQMGSSFKMY TLVAALSEGM NPEIVLNGNS PMQITPTWLV RNAGNYSYGA
ITLRQGTVYS SNTVYAQVAE AIGIDKILQT CYAMGIRTQL QPYLSTTLGS QGVTPIEQCT
AFATLAAGGV RRDAVAITRI EDRNGNVIYE HKDNPVQAIS PAVAAAATDV LSGVLTSGTG
RYAYNLKTFN QPVAGKTGTS DNSEDLWFCA YTPQLATVAW CGYPDSRDPV IIGGGESSTF
VTAQYVWAYY MNAALAGVSR AEFPKTTEKI SYKPDSYWKF VGGSASAKQK ESTTTTTNNN
NNDEEEEETT DEEEEDNSTT TPTTPTTPAT PGTGAGTGAG AGAGAGTGTP
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