| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0962 |
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| Symbol | |
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| ID | 8413833 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1086608 |
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| End bp | 1087864 |
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| Gene Length | 1257 bp |
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| Protein Length | 418 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 645022550 |
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| Product | RNA binding S1 domain protein |
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| Protein accession | YP_003179982 |
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| Protein GI | 257784765 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.331059 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGTGAGA TTCAGAACTC GTCCATCTTC TCTTTGGATG AAATTTCCGA TGAGGAAATG
AACAGCCTGA TTGACGGCAC TGTCACCGAT TTTGATGAGG GAGATCTTGT CAACGGTACC
GTCGTCAAGA TTGAGCGCGA TGAGGTCCTC GTAGACATTG GTTATAAGTC TGAGGGCGTT
ATTCCTGCTC GTGAGCTTTC TATTCGTAAA GACGTTAACC CTGCAGAGAT TATCTCTCTG
GGTGAGGACG TCGAGGCTCT TGTCCTTCAG AAAGAGGACA AAGAGGGTCG TCTGGTTCTT
TCCAAGAAGC GTGCTGAGTA CGAGCGTGCT TGGAAGGCAG TTGAAGATAA GTTCAACGCT
GGCGAGACCG TTGAGGGTGA GGTTATTGAG GTTGTTAAGG GTGGCCTGAT TCTTGACATT
GGCCTCCGTG GCTTCCTGCC TGCATCCCTT GTTGACCTCC GTCGTGTCAA GGATCTTGGT
GCATTCATGG GTACTCGTAT TGAGGCTCGT GTTATTGAGA TGGATCGCAA CCGCAACAAC
GTTGTTCTTT CTCGCCGTAT TGTTCTTGAG GAGGCTCGTA AAGCAGAGCG TCAGGACATC
CTTGGTAAGC TCCAGGTTGG CATGAAGCTC AAGGGTACCG TTTCCTCCAT CGTTGAGTTT
GGTGCGTTTG TTGATCTCGG CGGCATTGAT GGCCTGGTTC ACATCTCCGA GCTTTCTTGG
AACCACGTTA ACCACCCATC TGAGGTTGTT AAGGTTGGTC AGGAGGTTGA GGTTCAGGTT
CTCGACGTTG ACCTTAACCG TGAGCGTATC TCCCTTGGCC TTAAGCAGAC TTCCGAGGAT
CCATGGCGTG TACTTGTTTC TAAGTATCCA GTCGACGCTA TCATCGAGGG CACGGTCACT
AAGCTTGTTA CCTTTGGTGC ATTTGTTGAC CTTGGCAATG GCGTTGAGGG CCTTGTCCAC
ATTTCCGAGA TGGCTAAGCA GCATGTCACC GCTCCATCTC AGGTCTGCAA GGTTGGCGAC
GTTGTACAGG TAAAGGTCAT GGAGATTGAT CTTGACCGTC GTCGCATCTC TCTGTCTATG
AAGGCAGCTG CAGAGACTCT TGGAATTGAT ATTGAGGTCA CTCCACTTCC AGAAGAGGAG
CGTGCAGCAG CAGAGGCAGC AGCAGCTGAG GCTGAGGCTG ATCTTGCAGC TCATGAGGCA
GCAACTGAGA CAAAGATTGC TTCTGATAAG AAGGATGAAG AAGAGGCTTC CGAGTAG
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| Protein sequence | MSEIQNSSIF SLDEISDEEM NSLIDGTVTD FDEGDLVNGT VVKIERDEVL VDIGYKSEGV
IPARELSIRK DVNPAEIISL GEDVEALVLQ KEDKEGRLVL SKKRAEYERA WKAVEDKFNA
GETVEGEVIE VVKGGLILDI GLRGFLPASL VDLRRVKDLG AFMGTRIEAR VIEMDRNRNN
VVLSRRIVLE EARKAERQDI LGKLQVGMKL KGTVSSIVEF GAFVDLGGID GLVHISELSW
NHVNHPSEVV KVGQEVEVQV LDVDLNRERI SLGLKQTSED PWRVLVSKYP VDAIIEGTVT
KLVTFGAFVD LGNGVEGLVH ISEMAKQHVT APSQVCKVGD VVQVKVMEID LDRRRISLSM
KAAAETLGID IEVTPLPEEE RAAAEAAAAE AEADLAAHEA ATETKIASDK KDEEEASE
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