Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0959 |
Symbol | |
ID | 8413830 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | - |
Start bp | 1080074 |
End bp | 1081009 |
Gene Length | 936 bp |
Protein Length | 311 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 645022547 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_003179979 |
Protein GI | 257784762 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGATCGT TTCTAATCAA ACGAATCCTT CAAGCAGTTA GCGTTGTAAT TTGTATATCT GCTTTAACGT TTTTTGTCTT GAATATTGTT CCAGGTGATC CAGTAAGGGT CATGATGGGC GATATGGCTG ATGAGGCTAC GGTTCAGCAG GTTCGTCATA CGATGGGTCT TGATAAGCCA ATCCCAGAGC AGTATGCAAA TTGGTTTGTA AAAATGCTTG GTGGAGATTT TGGAACTTCC TACACTCAGA AGCGACCTGT CATTGCACTT CTGACAAAGG CTGTAGGAGT TACGCTGCGC TTAGCGGTAT TCGCGTATCT TTTTGCCATA GTGCTTGGCC TATTGATGGG CATTCTCGCT GCAGTAAACC ATGGAAAATG GCTTGATAGA ACACTTATGT CCGTTGCAAT CTTTGGTATT TCTGCTCCTT CGTTTTGGGT AGCATTGGTG CTGCAGATTA TTTTTGCTTT GACACTTAAG TGGTTCCCGC TTTCTGGCGT TAAGACTCCG ACAGCGTACG TTCTTCCTGT AATTGCATTG GGTTCTCGTT ATGCAGCAAG TATTGCTCGT GTTACTAGAA CTAGCATGCT GGATGTATTG AATCAGGACT ACATCAGAAC TGCTGAAGCT AAGGGTCTTA AGCGCTCTGC TATTGTTTTG AAGCATGCAC TGAGAAATGC TCTTATTCCA ATCATTACCA TTGCTGGCTC TCAGTTGGGA GACATTCTCA CTGGTTCCAT CATTATTGAG CAAATCTTTA ATATGAATGG TATGGGTAAG CTACTTATTG ATGCAATTAA TGCTCGTGAC CTGCCACTGA TTCAGGGTAG TGTCATGTAT GTGGCAATTA TCTGCGTTGT GATTTATTTA CTCGTTGATA TTTTGTACGC AGTGGTTGAT CCACGTATTC GTCTTGGAGA GGAGGCATCA GAGTAA
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Protein sequence | MRSFLIKRIL QAVSVVICIS ALTFFVLNIV PGDPVRVMMG DMADEATVQQ VRHTMGLDKP IPEQYANWFV KMLGGDFGTS YTQKRPVIAL LTKAVGVTLR LAVFAYLFAI VLGLLMGILA AVNHGKWLDR TLMSVAIFGI SAPSFWVALV LQIIFALTLK WFPLSGVKTP TAYVLPVIAL GSRYAASIAR VTRTSMLDVL NQDYIRTAEA KGLKRSAIVL KHALRNALIP IITIAGSQLG DILTGSIIIE QIFNMNGMGK LLIDAINARD LPLIQGSVMY VAIICVVIYL LVDILYAVVD PRIRLGEEAS E
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