Gene Apar_0959 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0959 
Symbol 
ID8413830 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp1080074 
End bp1081009 
Gene Length936 bp 
Protein Length311 aa 
Translation table11 
GC content43% 
IMG OID645022547 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_003179979 
Protein GI257784762 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGATCGT TTCTAATCAA ACGAATCCTT CAAGCAGTTA GCGTTGTAAT TTGTATATCT 
GCTTTAACGT TTTTTGTCTT GAATATTGTT CCAGGTGATC CAGTAAGGGT CATGATGGGC
GATATGGCTG ATGAGGCTAC GGTTCAGCAG GTTCGTCATA CGATGGGTCT TGATAAGCCA
ATCCCAGAGC AGTATGCAAA TTGGTTTGTA AAAATGCTTG GTGGAGATTT TGGAACTTCC
TACACTCAGA AGCGACCTGT CATTGCACTT CTGACAAAGG CTGTAGGAGT TACGCTGCGC
TTAGCGGTAT TCGCGTATCT TTTTGCCATA GTGCTTGGCC TATTGATGGG CATTCTCGCT
GCAGTAAACC ATGGAAAATG GCTTGATAGA ACACTTATGT CCGTTGCAAT CTTTGGTATT
TCTGCTCCTT CGTTTTGGGT AGCATTGGTG CTGCAGATTA TTTTTGCTTT GACACTTAAG
TGGTTCCCGC TTTCTGGCGT TAAGACTCCG ACAGCGTACG TTCTTCCTGT AATTGCATTG
GGTTCTCGTT ATGCAGCAAG TATTGCTCGT GTTACTAGAA CTAGCATGCT GGATGTATTG
AATCAGGACT ACATCAGAAC TGCTGAAGCT AAGGGTCTTA AGCGCTCTGC TATTGTTTTG
AAGCATGCAC TGAGAAATGC TCTTATTCCA ATCATTACCA TTGCTGGCTC TCAGTTGGGA
GACATTCTCA CTGGTTCCAT CATTATTGAG CAAATCTTTA ATATGAATGG TATGGGTAAG
CTACTTATTG ATGCAATTAA TGCTCGTGAC CTGCCACTGA TTCAGGGTAG TGTCATGTAT
GTGGCAATTA TCTGCGTTGT GATTTATTTA CTCGTTGATA TTTTGTACGC AGTGGTTGAT
CCACGTATTC GTCTTGGAGA GGAGGCATCA GAGTAA
 
Protein sequence
MRSFLIKRIL QAVSVVICIS ALTFFVLNIV PGDPVRVMMG DMADEATVQQ VRHTMGLDKP 
IPEQYANWFV KMLGGDFGTS YTQKRPVIAL LTKAVGVTLR LAVFAYLFAI VLGLLMGILA
AVNHGKWLDR TLMSVAIFGI SAPSFWVALV LQIIFALTLK WFPLSGVKTP TAYVLPVIAL
GSRYAASIAR VTRTSMLDVL NQDYIRTAEA KGLKRSAIVL KHALRNALIP IITIAGSQLG
DILTGSIIIE QIFNMNGMGK LLIDAINARD LPLIQGSVMY VAIICVVIYL LVDILYAVVD
PRIRLGEEAS E