Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0954 |
Symbol | |
ID | 8413825 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | - |
Start bp | 1074092 |
End bp | 1074886 |
Gene Length | 795 bp |
Protein Length | 264 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 645022542 |
Product | peptidase C26 |
Protein accession | YP_003179974 |
Protein GI | 257784757 |
COG category | [R] General function prediction only |
COG ID | [COG2071] Predicted glutamine amidotransferases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000028221 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGTTATTC CAGATATTGT TAAAGATGCA TTTAGTGATG TTTCAAATCT TCCTGCTTCT GAGCGTCCTC TTATCTGCGT GACTCCTCGT TGGATGCCTG AAGAGAACTT TTCTGATTCT GCTTCTGTAG GACAAATTCA GTTTGATGCC ATTCTTGCTG CAGGTGGCAT TCCAATCATG ATGCCTTTAA CTGAAGATCC AGAGGTTATT GCTCAGTTTG TTGAGATATG TGATGGCTTT TGTCTTACCG GTGGTCATGA TGTTGATCCA CGTAATTGGG GAGAAGAACC ACGTGACCTC AACCGTTTAT CTCCTATGAG AGATGCGCTT GAGTTTGAGT TAGTAAAACA AGTGCTTGCT GCAGATAAAC CATTACTTGC TATCTGTCGC GGTCTTCAGC TTTTAAATGT TGTACTTGGT GGTACGCTTG CACAAGATTT GCACACGCTT GAACCAGCAG AAAATCATGT ATTTTGGACC CATGCTGCAA ATCTGTATCA TCCAGCTCAT GCAGTTCATA TTCAAAAAGA TTCTTTGTTA TATGAAACTT TGGGTAAGGT TGAAGACATC CAGGTAAATT CATACCATGA TGAGGCTTTA CGAAAAGTAT CCTCTGAGCT CAATGTAGTT GCCTATGCCT CAGACGGCAT TATTGAAGGT GCTGAGGTTA AGGGAAAGAC GTTTGCCTTA GGTGTACAGT GGCATCCAGA GTATGGATGG CATTACAGCA AGGCTGACTG CGAACTTTGG AAATCCTTTG TTACAGCTTC ACAAGCTTCA CGGTCTTCTC GTTAA
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Protein sequence | MVIPDIVKDA FSDVSNLPAS ERPLICVTPR WMPEENFSDS ASVGQIQFDA ILAAGGIPIM MPLTEDPEVI AQFVEICDGF CLTGGHDVDP RNWGEEPRDL NRLSPMRDAL EFELVKQVLA ADKPLLAICR GLQLLNVVLG GTLAQDLHTL EPAENHVFWT HAANLYHPAH AVHIQKDSLL YETLGKVEDI QVNSYHDEAL RKVSSELNVV AYASDGIIEG AEVKGKTFAL GVQWHPEYGW HYSKADCELW KSFVTASQAS RSSR
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