| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0916 |
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| Symbol | |
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| ID | 8413786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1025666 |
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| End bp | 1028011 |
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| Gene Length | 2346 bp |
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| Protein Length | 781 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 645022503 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_003179936 |
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| Protein GI | 257784719 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.557683 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCAGATA ATAAGCTGAG TGTGAGACGT GTTGAGGGAG TTGTTGACGG AACCGTTGCT
GCAACTCTGT CTCAGTTGCT ACGACTGACC AGTGATGCAG TCATCGTTTT TAATATGGAG
GGCATAGTTC TTCTCGCCAA TGAGGAAGCC GAGACCTTAT TTGCTAAGGC TGACGGTACA
ATTGCTGGCC TGGATGTGCG CTTTTTGTTT GCCCCTGCAA ATCAAGAAAA TTTGCAAGAG
GCGTTTTCTG TAGAGTCGTT GCCGTTTGCG ATTGATGGTT CTACCTCTAT GGTGACTGCT
CCCTCGCAAG ATGGTACGTC GCAGGTGCTG AGTGTGCGCG CAGATTATGT TGGCGCACCT
ACGCAAGCCA TTGTTTTGTC AGCATCTAAG CTTCGTGATC TGTCTAGTTC TATGCACGAT
GATGAACGAA TGGTGTTGGA CCTTCGACGC GCCAATAAGA GGCTCTCAGG AGCGCTCCAG
ATTGTTTTGG ATACGCTTGA CTCGGAAGAT ATGAGTCAGC TTATTGAACG TGTGTTAGAA
GAGCTCTCAG AGACTGTTGA GGCCGATGGC GCGCTTATTT ATCTTGCCGA GCAAGACGGG
TATCACCTTC ATGGTGTTAC GGAGTCACTG AGAAGTGCAT TACTGAGCGG TATTCCTCGC
TATTTTGCAT TTAACAGCTC TTTGGAGCGT TTGTTGTTTT ATTCTGAGCA CGCGCTCCGC
TTGCACACTG TGCCCCTGAA CTCGGATGCT CTTAAGCAGG GAAGGGTTAA AAAGCGCAAT
TTAGTTAACG AGGAAACACG CGAGGTCATA ACCGTTGACG CAAGTCATCT TCCTCCGTTT
ACCAGTTTTC TTGTGGTGCC TGTGTGGTTT GGTGGTCACA TTGTTGCCTT GATTGAGGTG
GGTTGGGAGC GCAAGCGTGC GCTTCTGGTC GAGGATGCAA GACTTCTTGA CTCTATTGCA
AATTACCTCT CAGTGCAGCT TGTAGGTGCG TTGTCAGCCA TGAGGACGCA GCGTAGAGAT
ATGCTTCGTG AGGCATTAGC TCGCGTACGC CAAGGATTAC TCCATAGCAC TGCAGAGGGT
GAGAAGATCT CTGGTGAACG TCTGCAGCAG GTTATGAGGT CGGTGGGAAC TGATCTTAAT
ACACAGGTTT TCTCGATAGA TTGCTGCGAG GTAACGGGCA ACATTACACT TCATATGCTT
GACGCTGAGC AAGGATTTGC TGATGCTCAG GACGGTGGCA CGCAAAGTGT GGCTGAGGCG
GATAATGACG CACAAGTCAC AGCTGAGCAG CAAGATAGTG GCAAGCAGAT TGCGCTTCCA
TCGACGGTTG AAGGACTCAA GACAGGGGAG GGCGAGGCAT CAGTTAAAGA GGTTGAGCTT
GATTCTGAGC TGAGCCGAGC GCTTGCCGCA CAAGGTTTGC CTTGCAAGGG AGCTGTGCTT
TTCTTGGGCA GGTTTGCAGG AGAGCAGCAT ACCTGGCTTT TCTTGCGAGA AGAAAATGCT
GAGCCCTTGA GCGACATTGA GTTTGATTTC TTAGATCGTG TGATGCTTCT TGTTCACTCG
CTGGTAGTTG GCGCCGAAGA GAGTCAGCAG AACAAACACA TTTCGCAGGC GCTGCAGTCA
GGCATGAAGA ATGAATTGCA ACAGGTCGAG GGAATCTCTG CCGAGGGAAT TTATTCATCT
GCAACCGCCG ATGCGTTTGT TGGTGGCGAT TTTTACAGCA TGATTAAGCT GCCAGGCCGT
CGCGCGTGTA TCATTATGGG CGATGTTTCT GGTAAGGGTA TTGAGGCGGC ATCCATTTCA
TCCGCAGTTA AAACGGCACT TTCTGCTTAT GCATGGGAAG GAAGAACCCC TGCTCGCATG
GTGGCAACCC TGAACGAATT CTTGTTAGGT TTCTCAAGAG TAGAGACGTT TGCAACGCTT
TTTGTTGGCA TTGTTGACCT TACTACCTCA TCACTTATGT ACTGTTCTGC TGGCCATCCA
CCTGCAATTC TGGTGTCTGC TCAATCGGGT GACGCTGAGC TTTTGGATGT ACAGTCGGGC
GTTGTGGGCG CGTTTCATGA CATGGAGTAC AAAAACGGTA CCGTTTGCTT GCATGAGGGC
GATATCCTGC TACTTTACAC TGATGGAACC ACAGAGGCAC GTAGTCCTGA AGGCGCTTTT
TTTGGTGAGA CTGGCTTGCG CGACATGATT ATGAATGAGG TTCCTCGTGG GTTTGATGGC
TTGCTAAATA GGTTTTTGAA TACGCTTGAC CGCTATACTG GCAGAAGACT TGACGATGAT
GTTGCAATGG TTGCTTTGCG CTTTGACGAG CTTGGTAATG CCGATTCTGG CAAGAAGAGC
AACTAG
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| Protein sequence | MADNKLSVRR VEGVVDGTVA ATLSQLLRLT SDAVIVFNME GIVLLANEEA ETLFAKADGT
IAGLDVRFLF APANQENLQE AFSVESLPFA IDGSTSMVTA PSQDGTSQVL SVRADYVGAP
TQAIVLSASK LRDLSSSMHD DERMVLDLRR ANKRLSGALQ IVLDTLDSED MSQLIERVLE
ELSETVEADG ALIYLAEQDG YHLHGVTESL RSALLSGIPR YFAFNSSLER LLFYSEHALR
LHTVPLNSDA LKQGRVKKRN LVNEETREVI TVDASHLPPF TSFLVVPVWF GGHIVALIEV
GWERKRALLV EDARLLDSIA NYLSVQLVGA LSAMRTQRRD MLREALARVR QGLLHSTAEG
EKISGERLQQ VMRSVGTDLN TQVFSIDCCE VTGNITLHML DAEQGFADAQ DGGTQSVAEA
DNDAQVTAEQ QDSGKQIALP STVEGLKTGE GEASVKEVEL DSELSRALAA QGLPCKGAVL
FLGRFAGEQH TWLFLREENA EPLSDIEFDF LDRVMLLVHS LVVGAEESQQ NKHISQALQS
GMKNELQQVE GISAEGIYSS ATADAFVGGD FYSMIKLPGR RACIIMGDVS GKGIEAASIS
SAVKTALSAY AWEGRTPARM VATLNEFLLG FSRVETFATL FVGIVDLTTS SLMYCSAGHP
PAILVSAQSG DAELLDVQSG VVGAFHDMEY KNGTVCLHEG DILLLYTDGT TEARSPEGAF
FGETGLRDMI MNEVPRGFDG LLNRFLNTLD RYTGRRLDDD VAMVALRFDE LGNADSGKKS
N
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