Gene Apar_0896 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0896 
Symbol 
ID8413762 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp1000657 
End bp1002444 
Gene Length1788 bp 
Protein Length595 aa 
Translation table11 
GC content45% 
IMG OID645022479 
Productamidohydrolase-like protein 
Protein accessionYP_003179916 
Protein GI257784699 
COG category[R] General function prediction only 
COG ID[COG0388] Predicted amidohydrolase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000474495 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.217334 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCATAG CAGTTGCACA AATGAATACT CGGGCTGGAG ACTTTGAATT TACCGCTCAA 
ACCATGCTGG AATATGCTCA GCGGGCCCAA CAGCAGGGTG CTGAGCTAGT CATCTATCCT
GCGCCAACTC TTACAGGACT GTTAAGCGTA CCAGAGGCTG ATACGGACGG TCTCTTTGCA
GACCTTTCTG AGACTATTAA CTTTCTTTCA GAAAAACTTC CTATTGCAGC TCTTATTCCT
GTTGTAACAG AGTTTGATGG AAACGCGGCT AGCGAGGTCT TTCTTGTCAG AAACGGTGCT
GTAACCCCAC TTAAACTAAC TGCTCAGATA GCGCATATGA GCGCTCTTGC TCGCTCTGCT
AGTTCTTCGC AAGATTCTAA CGAGGATACT GTTGAGCTTG CAAAGTTTGA AGCAGGCGGC
CTTACGTTTG GCATTGCTTT TACCTACGAA GATCTTGACG CATGGCAAGA TGTCGATGAC
TCGTTAGATG CTGTTATTTA TCTGCCATTT TTTGGTTTTG CTGTTGATGA TTCATCATCT
GCTATGGGTA TGGCTGTGGC AGAAAGCCGT TATCTAGGGG ATGTTGAAGA ATTTGATAGT
TGGCTTATTG CTGCAAACGC TGTTGGTGCC TATGGCAACC AGGTGTTTTG TGGTTCAAGT
TTCTTCTTGT CACCCTCGGG AGATTTGGTC AAACAGGCGG CATCATTCTC AGAAGATATG
GTTGTCTGCG ACGTTGACCA AGATACCATC GAAAACTTTG ATAGAGAAGA TACCGCAGGT
GTTTATAACA GTGCACTTAC TACCTGGGGC GTATTGGCTA CAGGCGTACG AGATTACACA
GTAAAGTCTG GCTTTGATGG CGTATTTATT GCGGTTGATG GCTCGCTTAA TTCTCTGGTT
ACCGTTGCTC TTGCCTCGGA CGCCTTAGGT CCCATGCGTG TACATGTACT GTTGCTTCCA
AACAAAAATT CAAGAGCAAC AAGCGCTGCG GAGCTGCTTG CTGCTAGACT TCGAGTTAAT
AAGGTTGCCG TGGACAGCAC GGTTTTCTCG ACATTGACCG ATACAAAATT GGTTAGTGCA
TATGGCTATA CTTATGCTGA CCAGCACAAT TACTTAACGC TTGAGACTGC CGATAAAACC
ATTCTTGCAC TTAAGGGAAC AGAGATTTCC AGTGCACACT CCTTGTGGCC ACTGGGAGAT
ATGTACCATG CAGACATTGT TGACCTAGCA AGAGTGAGAA ATACTTTCTC ACCAGCTATT
GACCATGCAG TTCTCGAGAA TATCTCTGAG GTTGTAACTG ATGGATTAGA GAATGCAGCA
TCAACCTCTC AAGAGCGAAT TGAGTTTGTT GACTACGTGC TCACTAGCTA TCTTGAGTGG
AATAAGAGCA TTTCTGCAAT TGTGGAGGAA ATGGGAAAGG TTGACGAGGT CAAAGCAATT
ATTTCTATGC TACATGCGCA CCAAAAAGAT CGCAGAAATA CTACTGAAGT TCTGGAGATG
TCTTCAAAGA GTCTCATGAA TGCTCAAATT CCACATGTAT CTGTCTGGCA AGACAGGATT
AGAGATACAA AAGCTTCAGA ATCTAAGCTG GTAGAATCGC TGCGAAATTC TTTGCGAGAA
ATTCAAGGGA CTTCTATACG TCTATCTGAG TTGTCAGTTG ACCCGACGGA GGCTCGGGAA
GGCTTTAAGG ATATGCTTGA GCTTTTAAAA GAGCTTGCAC AAGAAACTGA CACACAAATT
GGCATAGTCG ATCCAAAAAT GTGGAGAGGT CCCTTCTCAG AAAATTAG
 
Protein sequence
MRIAVAQMNT RAGDFEFTAQ TMLEYAQRAQ QQGAELVIYP APTLTGLLSV PEADTDGLFA 
DLSETINFLS EKLPIAALIP VVTEFDGNAA SEVFLVRNGA VTPLKLTAQI AHMSALARSA
SSSQDSNEDT VELAKFEAGG LTFGIAFTYE DLDAWQDVDD SLDAVIYLPF FGFAVDDSSS
AMGMAVAESR YLGDVEEFDS WLIAANAVGA YGNQVFCGSS FFLSPSGDLV KQAASFSEDM
VVCDVDQDTI ENFDREDTAG VYNSALTTWG VLATGVRDYT VKSGFDGVFI AVDGSLNSLV
TVALASDALG PMRVHVLLLP NKNSRATSAA ELLAARLRVN KVAVDSTVFS TLTDTKLVSA
YGYTYADQHN YLTLETADKT ILALKGTEIS SAHSLWPLGD MYHADIVDLA RVRNTFSPAI
DHAVLENISE VVTDGLENAA STSQERIEFV DYVLTSYLEW NKSISAIVEE MGKVDEVKAI
ISMLHAHQKD RRNTTEVLEM SSKSLMNAQI PHVSVWQDRI RDTKASESKL VESLRNSLRE
IQGTSIRLSE LSVDPTEARE GFKDMLELLK ELAQETDTQI GIVDPKMWRG PFSEN