Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0896 |
Symbol | |
ID | 8413762 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | - |
Start bp | 1000657 |
End bp | 1002444 |
Gene Length | 1788 bp |
Protein Length | 595 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 645022479 |
Product | amidohydrolase-like protein |
Protein accession | YP_003179916 |
Protein GI | 257784699 |
COG category | [R] General function prediction only |
COG ID | [COG0388] Predicted amidohydrolase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000474495 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.217334 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCATAG CAGTTGCACA AATGAATACT CGGGCTGGAG ACTTTGAATT TACCGCTCAA ACCATGCTGG AATATGCTCA GCGGGCCCAA CAGCAGGGTG CTGAGCTAGT CATCTATCCT GCGCCAACTC TTACAGGACT GTTAAGCGTA CCAGAGGCTG ATACGGACGG TCTCTTTGCA GACCTTTCTG AGACTATTAA CTTTCTTTCA GAAAAACTTC CTATTGCAGC TCTTATTCCT GTTGTAACAG AGTTTGATGG AAACGCGGCT AGCGAGGTCT TTCTTGTCAG AAACGGTGCT GTAACCCCAC TTAAACTAAC TGCTCAGATA GCGCATATGA GCGCTCTTGC TCGCTCTGCT AGTTCTTCGC AAGATTCTAA CGAGGATACT GTTGAGCTTG CAAAGTTTGA AGCAGGCGGC CTTACGTTTG GCATTGCTTT TACCTACGAA GATCTTGACG CATGGCAAGA TGTCGATGAC TCGTTAGATG CTGTTATTTA TCTGCCATTT TTTGGTTTTG CTGTTGATGA TTCATCATCT GCTATGGGTA TGGCTGTGGC AGAAAGCCGT TATCTAGGGG ATGTTGAAGA ATTTGATAGT TGGCTTATTG CTGCAAACGC TGTTGGTGCC TATGGCAACC AGGTGTTTTG TGGTTCAAGT TTCTTCTTGT CACCCTCGGG AGATTTGGTC AAACAGGCGG CATCATTCTC AGAAGATATG GTTGTCTGCG ACGTTGACCA AGATACCATC GAAAACTTTG ATAGAGAAGA TACCGCAGGT GTTTATAACA GTGCACTTAC TACCTGGGGC GTATTGGCTA CAGGCGTACG AGATTACACA GTAAAGTCTG GCTTTGATGG CGTATTTATT GCGGTTGATG GCTCGCTTAA TTCTCTGGTT ACCGTTGCTC TTGCCTCGGA CGCCTTAGGT CCCATGCGTG TACATGTACT GTTGCTTCCA AACAAAAATT CAAGAGCAAC AAGCGCTGCG GAGCTGCTTG CTGCTAGACT TCGAGTTAAT AAGGTTGCCG TGGACAGCAC GGTTTTCTCG ACATTGACCG ATACAAAATT GGTTAGTGCA TATGGCTATA CTTATGCTGA CCAGCACAAT TACTTAACGC TTGAGACTGC CGATAAAACC ATTCTTGCAC TTAAGGGAAC AGAGATTTCC AGTGCACACT CCTTGTGGCC ACTGGGAGAT ATGTACCATG CAGACATTGT TGACCTAGCA AGAGTGAGAA ATACTTTCTC ACCAGCTATT GACCATGCAG TTCTCGAGAA TATCTCTGAG GTTGTAACTG ATGGATTAGA GAATGCAGCA TCAACCTCTC AAGAGCGAAT TGAGTTTGTT GACTACGTGC TCACTAGCTA TCTTGAGTGG AATAAGAGCA TTTCTGCAAT TGTGGAGGAA ATGGGAAAGG TTGACGAGGT CAAAGCAATT ATTTCTATGC TACATGCGCA CCAAAAAGAT CGCAGAAATA CTACTGAAGT TCTGGAGATG TCTTCAAAGA GTCTCATGAA TGCTCAAATT CCACATGTAT CTGTCTGGCA AGACAGGATT AGAGATACAA AAGCTTCAGA ATCTAAGCTG GTAGAATCGC TGCGAAATTC TTTGCGAGAA ATTCAAGGGA CTTCTATACG TCTATCTGAG TTGTCAGTTG ACCCGACGGA GGCTCGGGAA GGCTTTAAGG ATATGCTTGA GCTTTTAAAA GAGCTTGCAC AAGAAACTGA CACACAAATT GGCATAGTCG ATCCAAAAAT GTGGAGAGGT CCCTTCTCAG AAAATTAG
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Protein sequence | MRIAVAQMNT RAGDFEFTAQ TMLEYAQRAQ QQGAELVIYP APTLTGLLSV PEADTDGLFA DLSETINFLS EKLPIAALIP VVTEFDGNAA SEVFLVRNGA VTPLKLTAQI AHMSALARSA SSSQDSNEDT VELAKFEAGG LTFGIAFTYE DLDAWQDVDD SLDAVIYLPF FGFAVDDSSS AMGMAVAESR YLGDVEEFDS WLIAANAVGA YGNQVFCGSS FFLSPSGDLV KQAASFSEDM VVCDVDQDTI ENFDREDTAG VYNSALTTWG VLATGVRDYT VKSGFDGVFI AVDGSLNSLV TVALASDALG PMRVHVLLLP NKNSRATSAA ELLAARLRVN KVAVDSTVFS TLTDTKLVSA YGYTYADQHN YLTLETADKT ILALKGTEIS SAHSLWPLGD MYHADIVDLA RVRNTFSPAI DHAVLENISE VVTDGLENAA STSQERIEFV DYVLTSYLEW NKSISAIVEE MGKVDEVKAI ISMLHAHQKD RRNTTEVLEM SSKSLMNAQI PHVSVWQDRI RDTKASESKL VESLRNSLRE IQGTSIRLSE LSVDPTEARE GFKDMLELLK ELAQETDTQI GIVDPKMWRG PFSEN
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