Gene Apar_0889 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0889 
Symbol 
ID8413755 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp994325 
End bp994987 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content38% 
IMG OID645022472 
ProductHAD-superfamily hydrolase, subfamily IA, variant 3 
Protein accessionYP_003179909 
Protein GI257784692 
COG category[R] General function prediction only 
COG ID[COG0637] Predicted phosphatase/phosphohexomutase 
TIGRFAM ID[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.45367e-06 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0902559 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATTTTCT CGACACTTGA AAATATTCTT GCAACAAATA TTGAAGCAGT AATTTTTGAT 
TTTGATGGCA CTATTGCTCA TACACACCAT ATTTGGAAGC TTGTTGATCA AGAGTTTTTT
GAGTCACGAG GAATCCCTTA CACTCCTGAA ATTGGCAAGA TTCTCTCTCC TCTTGGATTT
GAAAAAGGTG CTGAGTGGGC AATTTCTACG TATAAATTAA ATGAGGATCC GAAAAAAATT
ATTACAGAGT GGAAAGAACT AGGTAAAAGT TTTTTTATAA ACTCAGTACA GCTCCGTCCT
GGTGTTGTTG AATTTATTAA CCAGCTAAAA GAGAGGCACA TTTCCACAGC ATTGGCAACC
GTTAACGAAC CAGAGCTTCT TGCTCTCCTT GAACCTCGCT TGCATCTATC TACTCTATTT
GATACTCAGG TATTTGCTGC TGATGTCGGA TCTGCAAAAG ATGAACCGTA TTTATATTTA
GAAGCTCTTG CGCGTCTTAA GGCTAAAGCC AAGAAAACAC TTCTGTTTGA AGACATTCCG
CTAGCCATTC AAACAGGTAA CTCTATTGAC CTTATTACCT GTGCTGTTAA TTGTGATGAT
GAACATCAAG ATATCGAGAA ACTCTCTAAG CTTGCTGACT TCACCATCAA ACACTGGTAT
TAA
 
Protein sequence
MIFSTLENIL ATNIEAVIFD FDGTIAHTHH IWKLVDQEFF ESRGIPYTPE IGKILSPLGF 
EKGAEWAIST YKLNEDPKKI ITEWKELGKS FFINSVQLRP GVVEFINQLK ERHISTALAT
VNEPELLALL EPRLHLSTLF DTQVFAADVG SAKDEPYLYL EALARLKAKA KKTLLFEDIP
LAIQTGNSID LITCAVNCDD EHQDIEKLSK LADFTIKHWY