| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0888 |
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| Symbol | |
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| ID | 8413754 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 991538 |
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| End bp | 994210 |
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| Gene Length | 2673 bp |
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| Protein Length | 890 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 645022471 |
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| Product | cell wall hydrolase/autolysin |
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| Protein accession | YP_003179908 |
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| Protein GI | 257784691 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000852469 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.142876 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCGCA GCTTATTTAG TACTCGCGGT AAATTGTTTG CTGTTTTGCT TTTTGTTGTC
GCAGCATTAT TTGTAACAAC AGTTCAAAAC GTATATGCAA CTACCTATAC AACTATGGAT
GCCCAAGGCA ACATAGTTCA GAGCCAATCT CTAAGTGATG CTGTTGCACT TTCTCGTGCA
ACAGGAAGAC CAATCGCATT GGATCCTGGT CACAGTGATG GAACAGATGG TCGAGATCCA
GGTGCAATGT ATTACGGTTT AAAAGAAGGT GATATTGCCT GGGCTACGGC CATGTATGTC
AAGAAATATC TTGGGCAATG GGGGGTCCCT GTTGTAGTTG TTCGTGGGGA GCATGAAGAC
CCTTCGCTCA AAACACGTGT ACAGCGCGCC GTTGATCATA ATGCCTGTGC CATTATTTCT
TTGCATTACA ACGCAGGTCC TGCATCAGCA ACAGGCTCTG AGGTTTTAGT TCCTCATGAC
GTTAGTTATA ACCACGATCT TTATGTTGCT GGGCAGGCTC TTGCCGGTAA GGTTAATTAT
TACTTAAGAA ATAAAGCGGG CATTGTCACC CGAGGTGATG GTGCTACTGA GCGCGGCTAT
AACGATAAAT ATGGAACAGA CTATTACGAG AATGGCGATG AGTCCGATTA CTACGGTATT
GTTCGTTATG CTCGTCAAAA AGGAATTCTT GGTGTAGTTA TTGAGCACCA GTTCATTTCT
AATCCCGCTC ATGCTGCTGA GTTTAAAGAT CTTGGCGATA ACTCAAAAGT TGACTATATT
GGCTGGGCTG ACGCCTGGGC AATTTGGGAG ATGTATCACT CCGATACCTG GTGGAATATG
AGGGGCATTT CCGCTGTTCA ACAGGGTAAC AAAGTGACGG TTAAACCTGT CTTGACTGGC
GTTGTTACGG GTGCAACATT TACCTTTGGC TATACAGCTC CAGATGGTTC TTGGACAACT
GTTGCGTATA AGACTACTGA TACATCTATT TCTTTTGTTC CTCCTATGAC TGGTCGATAC
GTTTTGTATC TCAAGGCCAT TTCGTCTGAT GGACAGGAAA TTACACGTCA GATGAATTTT
GAAGCAACCG AAGGTGCAGT CACCGGTTGG AAGCAAGTTG CTAACGGATG GATGTATACC
GATGATAATG GCTTTAGGTA TGTAAATCGT TGGCTTAACG ATGCTGATGG TTGGCATTAC
TTTGGCGCCC AAGGAATTGC AACTTCTGGT TGGATTACTA CTGCCGACGG TAAGACGTTC
TATGCTGATC CATCATCTAC TCATAATGCT GTGAAGCTTG GCCAATTTAC GGTACAAAAT
AGAGATTATT ATGCCGATAC CACTGCTGGA GTCATTAAAG ATGGCTGGGT AAATTATGGT
GACGGAAATT GGTCGTGGGC TAACTCAGAT GGTTCACTCT ACGCTGGTTG GAAGCTTCTT
CCAAACGGTA AGTGGTTCTA TTTTGATGCC AACAACAAAT ATCACGCAAG CTTTGGTCTT
ATGTTTGATG GGGATCAGAA GTATTACGTT GACCGTGATC GTGGCTTGCT TTATGGCGGT
TGGATTAGAC TCGCCGATAA CAATTGGGTA TGGGCTAATA CAGATGGTTC GCTCTATGCT
GGTTGGAAGC TTCTTCCAAA CGGTAAGTGG TTCTACTTTG ATGAAAGCGC AGAATATCCT
CTTCTAAAGA CAGGTGTCTT CACTATTTCT AGTGGTTCGT ATTATGTTGA TGCAAATAAG
GGAATGACTT CTAATGATTG GGTCCAGTTA CCAAATAACG GCTGGGCTTG GGCTCAATCA
AGTGGTGCTT TAGCTTCTGG TTGGTTCAAT ACTCCAAATG GCAAGACCTG GTACTTTGAT
CCAACTACTC ATGAGCATGC TGTACTCATT GGTCTTCAGG TAATTAACGG TTCGTACTAT
TACTTTGATT TGGGCTATGG CCTGCTGCGC AATCAAGACG TCACGCTTCC AGATGGTCGT
GTTGTTCACG CAGATGCAAG TGGTGTTCTT AATATCAAAC CAACTGATAA AAATAACGAT
AAAGACGGAA ACGTTGACGG CAATAACGGC AAAGAAAATA GTGACGCTGG AAATAACAAC
ACACCAGCTG ACGACAATTC TCCAATTGAG CCAACTCGTG GTAATTTCTC TGATCGTACC
AGCGTTCTTG GAGCTCCTCT TGTTTCTAAA GAGGACCTTC AAAGGGATTT CAACAAACGC
GTAGGTTCTG CTTATCCCGC TATTTATGCA GAGAGGGGCG CAGCAACAGG AGCAGACTTT
GTAAATCAAC TATGGCAAGC CGCAATTGAT GAAGGTGTTC GTCCAGAGCT TCTCTATGCA
CAGGTCATGA TTGAGACGGG TAACCTCCGC TTTGGTGGCG ACGTCCTTCC TGAACAGTGC
AACTTTGGCG GCCTTGGTGC AACTGGAAAC GGTGAGCACG GCAATTCGTT TGACACCGTT
CTCAAAGGCC TCCGTGCACA GGCTCTTCAT CTTCGTGCTT ATGCGGGTTT TGAGCCACTG
ACGGTTGATC CAAGCAAGGC TAGAGATGTG GACCCTCGTT ACGGTGCATG GATTCTTGCC
AGGAAAGCTA ACATTATTCG TAAGCTTGCT GGTACGTGGG CAACGGATAA GAATTATGCT
GTCAAGCTTG TTCGTGTAAT GAACGAGCTA TAA
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| Protein sequence | MNRSLFSTRG KLFAVLLFVV AALFVTTVQN VYATTYTTMD AQGNIVQSQS LSDAVALSRA
TGRPIALDPG HSDGTDGRDP GAMYYGLKEG DIAWATAMYV KKYLGQWGVP VVVVRGEHED
PSLKTRVQRA VDHNACAIIS LHYNAGPASA TGSEVLVPHD VSYNHDLYVA GQALAGKVNY
YLRNKAGIVT RGDGATERGY NDKYGTDYYE NGDESDYYGI VRYARQKGIL GVVIEHQFIS
NPAHAAEFKD LGDNSKVDYI GWADAWAIWE MYHSDTWWNM RGISAVQQGN KVTVKPVLTG
VVTGATFTFG YTAPDGSWTT VAYKTTDTSI SFVPPMTGRY VLYLKAISSD GQEITRQMNF
EATEGAVTGW KQVANGWMYT DDNGFRYVNR WLNDADGWHY FGAQGIATSG WITTADGKTF
YADPSSTHNA VKLGQFTVQN RDYYADTTAG VIKDGWVNYG DGNWSWANSD GSLYAGWKLL
PNGKWFYFDA NNKYHASFGL MFDGDQKYYV DRDRGLLYGG WIRLADNNWV WANTDGSLYA
GWKLLPNGKW FYFDESAEYP LLKTGVFTIS SGSYYVDANK GMTSNDWVQL PNNGWAWAQS
SGALASGWFN TPNGKTWYFD PTTHEHAVLI GLQVINGSYY YFDLGYGLLR NQDVTLPDGR
VVHADASGVL NIKPTDKNND KDGNVDGNNG KENSDAGNNN TPADDNSPIE PTRGNFSDRT
SVLGAPLVSK EDLQRDFNKR VGSAYPAIYA ERGAATGADF VNQLWQAAID EGVRPELLYA
QVMIETGNLR FGGDVLPEQC NFGGLGATGN GEHGNSFDTV LKGLRAQALH LRAYAGFEPL
TVDPSKARDV DPRYGAWILA RKANIIRKLA GTWATDKNYA VKLVRVMNEL
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