Gene Apar_0790 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagApar_0790 
Symbol 
ID8413655 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAtopobium parvulum DSM 20469 
KingdomBacteria 
Replicon accessionNC_013203 
Strand
Start bp872159 
End bp872908 
Gene Length750 bp 
Protein Length249 aa 
Translation table11 
GC content51% 
IMG OID645022372 
ProductDNA repair protein RecO 
Protein accessionYP_003179810 
Protein GI257784593 
COG category[L] Replication, recombination and repair 
COG ID[COG1381] Recombinational DNA repair protein (RecF pathway) 
TIGRFAM ID[TIGR00613] DNA repair protein RecO 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000558246 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.055878 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCTGGTA GAAAGACCAC TCGTCTTAAA GCAATTGTGC TTGATAGAAC AAAACTTGCC 
GAGCAAGACC TCATCTTGAC CATGCTTTCC GATACGGGAG AAGAACGCCG AGCTGTTGCA
AAGGGCGCCC GAAAGCCGGG AGGTCGTTTT GCTGCTCGCG TTGAACTCTT CTGCGAACTA
GACGTGCTGC TGGCAGAGGG ACGCTCACTT GATATCTTGT CTGAGGCAAC CTTGCTTGAA
CCGCACGCAA CGCTTCGCGG AGATCTTTCT AAAGTAGCTG CTGCATCTGC TATCTGCGAA
GTGGCGCGAT TTTCGTGTAT TGACGGCGTC GAGGATGCGT TTCTCTTCTC GCTGCTTTCA
CGTGCGCTTA AAGCCTGCGA AGAAGTGGAT GACGAGAAAC ACTTAGATCT TGTAGTTGCC
GCCTATGTGT TTAAGGTTTT AGCACACGAA GGCTGGCGCC CAGAGCTGGC ATCGTGCATT
GCCTGTGGAG ATGAGGCTTT GACGTACTTC TCGCCAACTG CTGGTGGTGC TTTATGTGGA
AGTTGTGCGC ATGAGATTGA GGGGGCTATT GAGGTGACTC AGCTTGAACT CTCGTGGTTG
TCGTCGCTTC TAAAACTTAC CTTTGACCAG CTGGTTGTTG CAGAAATTGC TCCAGAAACT
GCGCTCTTTT TGCTCACAAG CGCGCATATT TGGGCGGCTA CGCACCTTGA AGTGCGTCTT
AAAGCATTTG AATTTTTGCT CAGTATCTAG
 
Protein sequence
MPGRKTTRLK AIVLDRTKLA EQDLILTMLS DTGEERRAVA KGARKPGGRF AARVELFCEL 
DVLLAEGRSL DILSEATLLE PHATLRGDLS KVAAASAICE VARFSCIDGV EDAFLFSLLS
RALKACEEVD DEKHLDLVVA AYVFKVLAHE GWRPELASCI ACGDEALTYF SPTAGGALCG
SCAHEIEGAI EVTQLELSWL SSLLKLTFDQ LVVAEIAPET ALFLLTSAHI WAATHLEVRL
KAFEFLLSI