| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0723 |
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| Symbol | |
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| ID | 8413587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 801673 |
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| End bp | 802512 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 645022304 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_003179743 |
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| Protein GI | 257784526 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0159498 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0828355 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACAGAAG AGCGTATTGT CCCCATGCGT CTGCAGCGCT TTTTGGCGCG TGCAGGAGTG
GCTAGCCGGC GAGGCTCCGA GCGCCTGATG ACGTCTGGTC GAGTAACGGT AAACGGCCAG
GTAGTTACCG AGCTTGGCAG TAAAGTTGAT CCACTTGTAG ATGTAGTTGC GGTTGATGGT
GTTGTCTGTT CAATTGCCGA GAAACCCGTT TACTTGATGC TCAATAAACC TGCAGGTTAT
TTGACTACTA TGAAAGACCC CCAGGGTAGA CCAACCATTG TGGATATGGT TCCAACTGAT
ACGTATCCCG GTCTTTTTCC TGTTGGACGT CTTGATATGG ACACTACAGG CCTTCTTTTC
TTCACAACCG ACGGTCAGAT GGCACAAGAG CTCTTACATC CCTCAAAGCA TGTGTGGAAG
CACTATGTTG CTCATGTAGT AGGTACACCT ACAGAAGAGC AGTTAAATCG CTTACGTGAA
GGTATTGAAC TTGAAGATGG TCCTGCGGCT CCTGCAGAAG TAGAGATCAT TTCAGATGAC
GTTAAGATGA AAAATCTTCT TGCCCCACAG GGTTTAGGAA AAACTGGTGG AGGAGAGCCA
AATGCTCTGG TTAGCGTCAC TATTAGAGAA GGGCGTAAGC ATCAGGTCAA GAAGATGCTC
CTAGCTATTC ATCATAGAGT TCTTGCACTT CACAGAGATA CATTTGGTCC ACTTCATTTA
ACAAGAGTTA AAGAGGGTGA GTGGAGACTT CTTACAGAAG AAGAGGTTAC CGCTCTAGAG
CGTACTATTG GTAGAGAGCC GGGTACTTCT CCTATCATGC CTTTAAACAC CAGCAAGTAA
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| Protein sequence | MTEERIVPMR LQRFLARAGV ASRRGSERLM TSGRVTVNGQ VVTELGSKVD PLVDVVAVDG
VVCSIAEKPV YLMLNKPAGY LTTMKDPQGR PTIVDMVPTD TYPGLFPVGR LDMDTTGLLF
FTTDGQMAQE LLHPSKHVWK HYVAHVVGTP TEEQLNRLRE GIELEDGPAA PAEVEIISDD
VKMKNLLAPQ GLGKTGGGEP NALVSVTIRE GRKHQVKKML LAIHHRVLAL HRDTFGPLHL
TRVKEGEWRL LTEEEVTALE RTIGREPGTS PIMPLNTSK
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