Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0660 |
Symbol | |
ID | 8413520 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | - |
Start bp | 736032 |
End bp | 737342 |
Gene Length | 1311 bp |
Protein Length | 436 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 645022237 |
Product | shikimate kinase |
Protein accession | YP_003179680 |
Protein GI | 257784463 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase [COG0703] Shikimate kinase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.737166 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCTTTA AAGCTGAGCA GCAAATCTCA CATAACTCTA CAACTCCCCT TGCCCCTTTT GGACTTATTG GCGAGAAACT CTCTCACAGC TGGTCAGCAG AAATTCATAA AAAATTAGGA TCATTTCCTT ACGAACTCCA TGAGCTCTCC ACTTCAGAGC TGAAGGCTTT CCTCAAAGAC CAACCCTGGA GAGGTTTAAA CGTTACCATC CCTTACAAAA AGGAAGCCTG TGCTCTTGCA GACTCAGCTT CTGAGGATGC CCGAGCTATA GGTGCTGCAA ATACACTGGT AAAAGACGAG AGTGACTACA TAACTGCAGA CAACACTGAT GTGTATGGCT TTGAATACCT TATTAAAAGC CTCAAGATCA GTTTGAACCA AAAGAAGACG CTTGTTTTAG GGGCCTTTGG CGGTGCTGGT CAGGCAATTT GCTATGCACT CAAAAAACAT GGTGCGTATG TTGTGGGCGT CTCTAGAAAC TCTCAAGTAA GCTCATCATT TGTTGACTGT ACAATCACAT ATGACCTGCT TAAATTTCAC TATGATGCGG TTCTTCTCGT CAACGCAACA CCAGTAGGAA TGTCTCCTCA TGCTGGCATC TCCCCTCTTT CAAAAGAGGA ACTAACTTCT TTTGCTTCTT TACAGTGCGT GATTGATCTT ATCTATAATC CGCTACGCTC ACAGCTTCTT TTAGATGCAG AAAGCCTTGG ACTACTCAAT GTAAACGGTC TAAAAATGCT GGTAGCGCAA GCAGCCAAGG CTAGCTCGCT ATTTTTAGGT CAAGAAGTAT CAGACCTCCA GATAGAAAAA ATCTCGCAAG AGATTCATTC TTCAAAAGAG AACATTGTGC TCATTGGTAT GCCCGGAGTA GGAAAGACTT CTACAGGAGA AGCACTTGCA AAGCTCTTAA ATCGGCCTTG GATAGACACT GATTTTCTCA TTGAACAAAA GGTCCACTGC AACGCAGCAA CTTATCTACA AACATATGGT GAAGCAGCAT TTAGGAGTCT AGAGCATGAA ATAATTCAAG AAATTTCTAG TATGACCGGC GTGGTAATTT CTTGCGGAGG TGGCGCCGTT GTTACACCTT CAAACTACCA ACTGCTTCGT CAAAATGGAA AACTTATCTA TCTAACTCGT CCGCTTGAAA ATCTAGCTAT TGCAGGAAGA CCTCTCTCAC AAAGCATTGG TATACAAGAG CTTGCTAAAG AAAGGCTACC TATCTATGAA GCATGGGCAA ATCTAACTTT TCCCTGTCTT GGTAGCCCCG ATGCAGATGC CAAAGGGCTT CTCGCCACAG TACTTAAATA A
|
Protein sequence | MSFKAEQQIS HNSTTPLAPF GLIGEKLSHS WSAEIHKKLG SFPYELHELS TSELKAFLKD QPWRGLNVTI PYKKEACALA DSASEDARAI GAANTLVKDE SDYITADNTD VYGFEYLIKS LKISLNQKKT LVLGAFGGAG QAICYALKKH GAYVVGVSRN SQVSSSFVDC TITYDLLKFH YDAVLLVNAT PVGMSPHAGI SPLSKEELTS FASLQCVIDL IYNPLRSQLL LDAESLGLLN VNGLKMLVAQ AAKASSLFLG QEVSDLQIEK ISQEIHSSKE NIVLIGMPGV GKTSTGEALA KLLNRPWIDT DFLIEQKVHC NAATYLQTYG EAAFRSLEHE IIQEISSMTG VVISCGGGAV VTPSNYQLLR QNGKLIYLTR PLENLAIAGR PLSQSIGIQE LAKERLPIYE AWANLTFPCL GSPDADAKGL LATVLK
|
| |