Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0639 |
Symbol | |
ID | 8413499 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | + |
Start bp | 716862 |
End bp | 718001 |
Gene Length | 1140 bp |
Protein Length | 379 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 645022217 |
Product | ribonuclease D |
Protein accession | YP_003179660 |
Protein GI | 257784443 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.706315 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACGCAT TGTATATAGC AACCTCAGAA GAACTTTTCG CATTTTGTGA GCGAGCAAAG ACTTCACATA TCCTTGCAGT TGATACGGAG TTTCTTCGCG AGAAAACCTA CTTCCCCAAG CTTTGCCTGG TACAGGTTTC CACGGGTTCT GAGATTGCCG CGATTGATCC GCTGCTGATT GATGACCTCA CTCCACTTAA AGAACTCTTG GAGAATCCAG AAATTGTCAA GATTTTACAT GCCTGCTCAC AAGACCTTGA GGTCTTGCTA GAAAAAATGG ATTGCGCATG TGCTCCTGTA TTTGACACGC AGGTTGCAGC TGCATTTTTG GGTATGCGAC AGCAGGTGAG CTATGCCGGG TTGGTAGAAA ATTTTGCCAA CGTTAAACTT GCTAAGGCTG AGTCATTAAC GGACTGGTCA AAGCGACCTC TTGATAAAGA ACAGTTGGTA TATGCTGAGG ATGATGTTAG ATATCTTCCC GCAATTTACA ATCAAATGGT CGAGAAGCTC ATCAAACTTG ACCGTTTAAG TTGGCTTAAG CCGGAAATGG ACCAGCATAC AAATATTGAT CAGTACCGTC GAGATCCCTA TCAGGCATAT CTTCGTTTGA AGCGTTCTGG TTCACTTACG CGCAGGCAGC TTGCTATTGC TCGAGAGGTT TGCGCCTGGC GAGAAGAGAT TGCTGCTAAA AGAGATGTTC CACGTAAATG GGTGCTTTCT GATGAACTTA TTATCGAGAT TTGTCGCCGT GTCCCTACAA CATCAGATAG ACTACGCAAG ATTCGTGGCA CTGAGCAGAT TTCTCAAGGT GGGGTAGTAC ATCTTCTGGA TGCAATTAAA CGCGGACAAA AGACACCTGC TGGTCAGTGC CCAAAAATTG AGCATCATGC TCATCCTTCT GCTGGCTCAG AAGGTGTCGT TGAGTTAATG TATGCCCTTA TTAGAATTGT TTCAGAAAAA GAGGGAATTG CATCTCCTTT AATTGCTAAT AAAGACGATC TTACTGATCT GCTTTTGGAC AAGGATGATG CAAGACTTAA AACTGGATGG CGCTACCAAT TAGTAGGTAA ACAACTTGTT GGACTACTCA ATGGCGAGGT AGGGCTTACG GTTAAAAATG GTCGAGTAGA GCTGCTGTAG
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Protein sequence | MDALYIATSE ELFAFCERAK TSHILAVDTE FLREKTYFPK LCLVQVSTGS EIAAIDPLLI DDLTPLKELL ENPEIVKILH ACSQDLEVLL EKMDCACAPV FDTQVAAAFL GMRQQVSYAG LVENFANVKL AKAESLTDWS KRPLDKEQLV YAEDDVRYLP AIYNQMVEKL IKLDRLSWLK PEMDQHTNID QYRRDPYQAY LRLKRSGSLT RRQLAIAREV CAWREEIAAK RDVPRKWVLS DELIIEICRR VPTTSDRLRK IRGTEQISQG GVVHLLDAIK RGQKTPAGQC PKIEHHAHPS AGSEGVVELM YALIRIVSEK EGIASPLIAN KDDLTDLLLD KDDARLKTGW RYQLVGKQLV GLLNGEVGLT VKNGRVELL
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