| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0567 |
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| Symbol | |
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| ID | 8413421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 642899 |
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| End bp | 644074 |
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| Gene Length | 1176 bp |
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| Protein Length | 391 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 645022139 |
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| Product | integrase family protein |
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| Protein accession | YP_003179588 |
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| Protein GI | 257784371 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.563798 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00485057 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACCGCT CAATAAAAGT TCGATTGAAT TCGAACGGCA TTTGGTGCTG TAGGCTTTAC
TTAGGAAGAA ATCTTAACGG CAAAATCATT CAGCCTTATG CAAGCTTTCC TACGGCAAAG
ACGCAGAAAG AAGCTGAAGA ATTAGCCACT ATGTGGGCGT CTCATATTAC GTCTGACGGC
AAAGTTAAAA GCACACAGCT TACCGATTTA CTTCTCGAGT ATGTTTCTAT TAAACGCAGG
AATGGCGCGA GCCCTAACAC TACAAGGCAG CATGAAGGCT TCATTAGAAA CCATATCAAT
GGAAGGCTTG GTAAAGAGGA TGTAAGAAGT ATTACATCCT CTTTATTCAC TTCATTTGAG
CAGGATTTAT TGAAGAAGGG TTTGTCTCGA AACAGTGTAA TTAACCTGCA TCAATTCTTG
AGAGGTGCAT ACAATTACTT TGTTTCAGCT GGCATATGCG ACTATAACCC GCTTATTAAC
GTGGCTAAGC CGTCCAGGGA AGTCCATGAA GCTGTATCCA TTGAAGAATG GGGTTTTGCT
GGGATAAGTA CCCTTATTAA TTCCAGGATT ACTACAGCCA TTCAAGAGGA TGAGTTTAAT
TCCCGTGTTG TTTGTGCCTT TGCTGCTTGG CTGTCTTTAG TAACTGGTAT GCGCTGCGGT
GAAGTTTGTG CTATTAGATA CAGTGATGTA AACATGCTAT ATAAGCATAT CCACGTATCT
GGTACCGTCA TTGAAGAGTC TTACAGAAAG CCTTATAGAC GAGAATCAAC CAAGGGTAAG
AGATCTAGAA ACATAGCCAT TACAGACTCG GACATCAGTT TTATTAGTGA CTACATGAAG
CTTCAGCAAG CTCATATTGC CTTTGTGGAG TCTTCTACAC CGTTAATTAG CCTTGATGGC
TCTTACATGC GTCCAACGAG CGTTTCGAGG TCATTTACAC GCATGAGACG CACTCTCCAG
CTACCTCAAG GCATTACCTT CCACTCACTC AGACATACTC ACGCGTCTTG GTGTTTGGCA
AGTGGCGTTG ACTTAAAGAC TCTTTCAGAG CGTCTTGGCC ACGCAGACCC AGCAACAACT
TTGAGGATTT ATTCTCATTT GCTGCCTGGA CGTGACCGGG GAGCGGCAGA AGCGTTTGGA
GACGCGCTTA GGACCATTGA ACAAGGAGCG TTCTAA
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| Protein sequence | MNRSIKVRLN SNGIWCCRLY LGRNLNGKII QPYASFPTAK TQKEAEELAT MWASHITSDG
KVKSTQLTDL LLEYVSIKRR NGASPNTTRQ HEGFIRNHIN GRLGKEDVRS ITSSLFTSFE
QDLLKKGLSR NSVINLHQFL RGAYNYFVSA GICDYNPLIN VAKPSREVHE AVSIEEWGFA
GISTLINSRI TTAIQEDEFN SRVVCAFAAW LSLVTGMRCG EVCAIRYSDV NMLYKHIHVS
GTVIEESYRK PYRRESTKGK RSRNIAITDS DISFISDYMK LQQAHIAFVE SSTPLISLDG
SYMRPTSVSR SFTRMRRTLQ LPQGITFHSL RHTHASWCLA SGVDLKTLSE RLGHADPATT
LRIYSHLLPG RDRGAAEAFG DALRTIEQGA F
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