| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0537 |
|---|
| Symbol | |
|---|
| ID | 8413391 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Atopobium parvulum DSM 20469 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013203 |
|---|
| Strand | + |
|---|
| Start bp | 622824 |
|---|
| End bp | 623573 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 645022110 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003179559 |
|---|
| Protein GI | 257784342 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.135709 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000163343 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACTG AAAATATAAA TACTCAGGCA GCTGGTGTTG AAAAAGCTCT GCTGTCTGTT
AAGGATCTTA ATGTTTCTTA TGGTGCCATT CACGCAGTTC AGGGTATCTC TTTTGATATC
CACGAGGGTG AGATTGTCAC CCTTATTGGT GCTAATGGTG CAGGAAAATC AACTACACTG
AATACCATTG CTGGCCTGGT AAAGCCTGAT TCTGGCACCA TTACTCTTGA CGAGAAAAAC
CTTGTAGGTC AACGCGCCCA CAAGATTGTT GAGGCTGGCC TGGCGCTGTG CCCTGAGGGT
CGCCGTGTGT TTTCTCGCAT GAGTGTTGCT GAAAATCTTG AGATGGGTGG CTATACACAG
CCCGATTCCA AGAATGCCAA GACCGTCAAA ATGGTTTACG AGCACTTTCC ACGCCTTCGT
GAGCGTAAGA ATCAGCTGGC AGGAACGCTC TCTGGTGGCG AGCAACAGAT GCTTGCTATG
GGTCGTGCTT TGATGAGCAG ACCTAAGCTA CTGATGCTCG ACGAGCCTTC CATGGGCCTA
GCGCCCATTC TGATTGAGGA GATCTTCCAG ATCATTCGTC AGCTTGGTGA TGCAGGGACC
ACTATTTTAC TGGTCGAGCA GAACGCTAAC ATGGCACTTA AGGTTGCTGA TCGTGCGTAT
GTTCTTGAGC TTGGTAAGGT AGCTAAGCAT GGAACTGGCC AAGAGCTCCT GCATGACGAT
GACGTACGCA AGGCTTATCT CGGTGCGTAA
|
|---|
| Protein sequence | MATENINTQA AGVEKALLSV KDLNVSYGAI HAVQGISFDI HEGEIVTLIG ANGAGKSTTL
NTIAGLVKPD SGTITLDEKN LVGQRAHKIV EAGLALCPEG RRVFSRMSVA ENLEMGGYTQ
PDSKNAKTVK MVYEHFPRLR ERKNQLAGTL SGGEQQMLAM GRALMSRPKL LMLDEPSMGL
APILIEEIFQ IIRQLGDAGT TILLVEQNAN MALKVADRAY VLELGKVAKH GTGQELLHDD
DVRKAYLGA
|
|---|
| |