Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0535 |
Symbol | |
ID | 8413389 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | + |
Start bp | 620768 |
End bp | 621973 |
Gene Length | 1206 bp |
Protein Length | 401 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 645022108 |
Product | inner-membrane translocator |
Protein accession | YP_003179557 |
Protein GI | 257784340 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000000217655 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGACTAAAA TGTATCCACG CGATAATAAC CACAACCCAG TAATTGTCAC TGGTTTTGGT GGAAAAGATG GTCAGCGTCG TGAGCTTACT ATGCCTGCTC GCTATGCTAT CAATGCAATT CTTGTTGCAC TTTTTGTTTT TGGTGGAAAC TTCCTGGTAG GAGAGGGCCT TATTTCTCGC TATCAGACTG TTGTTTTTGA ACAAATCGGC GTATATGTAC TGATGACCGT TTCTCTGAAT ATTGTTACTG GATATTTGGG ACAGCTTCCT TTAGGTCACG CTGGCTTCAT GTCCATTGGT GGTTACGCCT GCGCAATTTT TATTATTCGC ATGATGCCGC TCTTTGGACT GGATGCTCAA TCCATGGCTT CAGGCTCTAC ACCAGCAGTG ATCCTCTTTG TTGTTGGTCT TTTGTTTGGT GGTATTTGCG CTGCTCTCAT GGGTATGGTT ATTGGTATTC CAGCACTTCG TCTTCGTGGC GATTATCTGG CCATCATTAC CTTGGGCTTT GCAGAAATTA TTCGTGTTGT CTTGGTGAAC ATTGACTCTG CTCTTGGCTT TAAACTTACT GGCGGTGCAT CTGGTCTGAC AGGTATTCCT GCCTATACGG GTTACCTGAA TACTGCGATT GTTGTTTCAC TTGCCATTTT TGCTATTCAT ACTCTCATGA AGTCCAGACA CGGCCGCGCT ATTCTCGCTA TCCGCGATAA CGAGATTGCA GCAGAGGCAT CTGGCGTTAA TACTACGTAT TACAAGACTC TTGCCTTTGT TTTCTCAGCG TTCATTGCTG GTATTGCTGG CGGTCTTTAC GCAGGCTGCA TTGGCGTCAT GGCACCAGCA AAGTTTGGCT TCATGAAGTC TGTTGAAATT CTAGTTATGG TTGTTTTGGG TGGCATGGGT TCTATGTTTG GCTCCGTTGT GTCCGCAACT GTCCTGACCG TACTTCCAGA GGCTTTACGT GCCTTTGCAG ACTACCGCAT GGTTGCTTAC GCAATCGTGT TGATTCTGGT CATGATTTTT AGGCCAGAGG GCCTGTTTGG CTCATATGAC TTCTCGCTGT CTCGCATCAT AGAGCGAATC ATGAACAGGG ATTTCCCTTG GAATAAAGAT GACTCGGATG AGCAGGCGGG CGTACAGGTC AACGCGCAGG CGGGTGTCCA GGCAGATACG CAGGCAGAGG TCTCAACTGA TTCGAAGGAG GTGTAA
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Protein sequence | MTKMYPRDNN HNPVIVTGFG GKDGQRRELT MPARYAINAI LVALFVFGGN FLVGEGLISR YQTVVFEQIG VYVLMTVSLN IVTGYLGQLP LGHAGFMSIG GYACAIFIIR MMPLFGLDAQ SMASGSTPAV ILFVVGLLFG GICAALMGMV IGIPALRLRG DYLAIITLGF AEIIRVVLVN IDSALGFKLT GGASGLTGIP AYTGYLNTAI VVSLAIFAIH TLMKSRHGRA ILAIRDNEIA AEASGVNTTY YKTLAFVFSA FIAGIAGGLY AGCIGVMAPA KFGFMKSVEI LVMVVLGGMG SMFGSVVSAT VLTVLPEALR AFADYRMVAY AIVLILVMIF RPEGLFGSYD FSLSRIIERI MNRDFPWNKD DSDEQAGVQV NAQAGVQADT QAEVSTDSKE V
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