| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0533 |
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| Symbol | |
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| ID | 8413387 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 618688 |
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| End bp | 619869 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 645022106 |
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| Product | Extracellular ligand-binding receptor |
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| Protein accession | YP_003179555 |
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| Protein GI | 257784338 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000200352 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGGCACACA AGCTAACGCG ACGACGCTTT TTGGAGGTGG CCGGGACCAT TGCGGGGTCG
TTTGCTTTAG CAGGCTGTTC GCCAAAGAAC CAAGACCCTA ACTCCATTTA CGTTGGCGTG
ATGGGTCCAT TTACCGGCGA CGTTGCTCAG TATGGACTCG CTGTGCGAAG TGGCGTTCTT
TTGTATCTTA AGGAGTTTAA CAAGAAGGGC GGCGTTAACG GTCGTCAGAT TGTTCCTGTT
GTTGAGGACG AGAAGGGCGA TTCAACTGAG GCTATTCTTG TTTACAACAA GCTTCTTGAC
GAGAATGTTT GTGCAATCCT TGGGGACGTT ACCTCAACGC CAACCATTGC ATTAGCACAG
AAATCGGTAC TGGACAACAT TCCTTGTGTT ACTGCATCTG CTACAGCAGA AGATGTTGTA
ACACACGGTA ATAACATGTT TCGTGCTACT GTTACGGACC CTTTTCAGGG CGTTGTTCTT
GCAGAGTTTG CTAAAAAGCA GGGCTATCAG CGTGTGGGAA CTATCTTTAA CTCCGGTGGC
GATTATGAGA TTGGTGTAAA TAACGCCTTT GTTCAGAAGG CTCGTGAGCT GGGCATTGAG
GTTGTATCCC AGCAGGGCTA TCCAACGGGA GCTGTTGACT TTAATGCCCA GCTTACCAGC
ATTATTGGTT TAGATCCTGA TGTTATCTTG GCTCCCAACT ATTATCAGGA TAACGGTAAG
ATTGTGACAC AGGCTCGCCA GCTTGGCTGC AAGAAGCCTT TTATGGGTGC AGATGGTTGG
GCAGGCATTA TTGGCGGTGA GCAGGATTAT GCTTCTGCTA CTGATCTTGA AGGATGCTTC
TATTGCTCCG CATTTGTTGC TTCAAATCCT GATGAAAAGG TGCAGCATTT TGTTACTGCT
TACACCGAGG AATACGGTGA GGCTCCAACT AATTTCTGTT CTTTGGGGTA TGACGCTGCA
ATGATTCTCT GCTCCGCTCT TGAGGTTGTC GAGAAACATG GCTATACCTA TAACTCTGAT
GCGTATAGAC AGGCAATTAT TGACGCTATT GCATCTGGTG TGGTCGAAGG TGTTACTGGA
GCCCTTTCAT ATCAGGGAAC AGGTGACCCA GTGAAGTCCA CCTTGATTAT TACCTTTAAA
GATGGCAAAG AGTCCATCTA TGACACAATC AATCCTTCAT AG
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| Protein sequence | MAHKLTRRRF LEVAGTIAGS FALAGCSPKN QDPNSIYVGV MGPFTGDVAQ YGLAVRSGVL
LYLKEFNKKG GVNGRQIVPV VEDEKGDSTE AILVYNKLLD ENVCAILGDV TSTPTIALAQ
KSVLDNIPCV TASATAEDVV THGNNMFRAT VTDPFQGVVL AEFAKKQGYQ RVGTIFNSGG
DYEIGVNNAF VQKARELGIE VVSQQGYPTG AVDFNAQLTS IIGLDPDVIL APNYYQDNGK
IVTQARQLGC KKPFMGADGW AGIIGGEQDY ASATDLEGCF YCSAFVASNP DEKVQHFVTA
YTEEYGEAPT NFCSLGYDAA MILCSALEVV EKHGYTYNSD AYRQAIIDAI ASGVVEGVTG
ALSYQGTGDP VKSTLIITFK DGKESIYDTI NPS
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